Nicotiana attenuata (coyote tobacco): 109231050
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Entry
109231050 CDS
T05870
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109231050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109231050
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109231050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
EIF3I
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
Cytochrom_D1
Beta-prop_NOL10_N
Beta-prop_SCAP
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_IFT122_1st
Beta-prop_NWD2_C
Beta-prop_WDR41
DUF3972
Motif
Other DBs
NCBI-GeneID:
109231050
NCBI-ProteinID:
XP_019252127
UniProt:
A0A1J6IKJ5
LinkDB
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Position
8:complement(22059567..22068171)
Genome browser
AA seq
437 aa
AA seq
DB search
MESNNSLEQTLQDGKLYRHVNSLIVAHLRDNNLNQAASAVASATMTPMNVEAPTNKLLEL
VAKGLAVEKDETLRGVSTAAPFDPVITTGYGSIPAPRTASVDFSSVNDTKGSSKIIPKHE
SRHVSEHKNVARCARFSPDGRFLATGSADTSIKLFEISKVKQMMQPDARDGPVRPVVRTF
YDHQQPINDLDFHPQNTVLISGAKDRTIKFFDFSKTVAKRAFRVIQDTHNVRSVSFHPSG
DFLLAGTDHLIPHLYDINTFKCYLPTNFQEMGVNGAINQVRYSSTGGMYVTASKDGAIRL
WDGVTASCARSIDGAHGAVEAIGANFTKDERYILSCGKDSSVKLWEVGTGRLVKQYLGAT
HTQLRCQAIFNDTEEFVLSVDESLNEIVAWDALTAEKVARWPSNHVGAPRWLEHSPVEAA
FVSCGMDRSIRYWKEVV
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggagagcaataatagcttggagcaaacactgcaagatgggaaattgtatcgtcatgtt
aattctctcattgtcgctcatcttcgcgataataatctcaatcaggctgcaagtgcggta
gcttcagccacaatgacaccaatgaatgttgaagctcctacaaacaagctacttgaattg
gttgcaaagggtcttgcagtggagaaagatgagacgctgagaggagtttccacagctgca
ccttttgatccagtcataactacaggatatggctcaatcccagcccctcggactgcttct
gttgatttcagtagtgtgaacgatacaaaaggctcgtcaaagattatcccaaagcatgaa
tcacgacatgtttctgagcacaagaatgtagcaaggtgtgccagatttagtccagatgga
agatttcttgctactggaagtgcggacacgtctattaaactgtttgagatttcaaaagtt
aagcaaatgatgcagccagacgcaagggatggcccagtgaggccggttgtacggactttt
tatgatcatcaacaaccaataaatgacttggattttcatccgcaaaacacagtactcata
tctggagcaaaagatcgcaccatcaagttctttgacttttcaaaaacggtggcaaagaga
gcatttagagtgattcaggatacacataatgtaaggtcggtgtcatttcatccttccgga
gactttcttctggcaggaactgatcatctaattccccacctatatgatattaacactttc
aaatgctacctgccaacaaatttccaagagatgggtgtcaatggtgctattaatcaggtt
aggtattcatctactggtggaatgtatgttactgcatccaaagatggtgctattcggtta
tgggatggggtaactgctagctgtgcgcgatccattgatggtgcacatggagcagtggag
gccataggtgcaaattttacaaaggatgaaaggtatatcctctcatgtggaaaagactct
tcggtgaaactttgggaagttggcacaggaagattggtcaaacaatatcttggagctaca
catacacagttgcgctgtcaggctattttcaatgatacagaagaatttgtgttatcagtt
gatgaatctctgaatgagattgttgcatgggatgctctgacagcagaaaaagtggctagg
tggccctccaaccatgttggtgcacctcgttggcttgagcattccccggtagaagctgca
tttgtgtcctgtggaatggatcgatccattcggtactggaaggaggtagtttag
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