Nicotiana attenuata (coyote tobacco): 109231291
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Entry
109231291 CDS
T05870
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
109231291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nau04121
]
109231291
03036 Chromosome and associated proteins [BR:
nau03036
]
109231291
Enzymes [BR:
nau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109231291
Ubiquitin system [BR:
nau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109231291
Chromosome and associated proteins [BR:
nau03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
109231291
Noncanonical PRC1 (PRC1.1)
109231291
Noncanonical PRC1 (PRC1.3/1.5)
109231291
Noncanonical PRC1 (PRC1.6)
109231291
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-rbx1
zf-RING_4
zf-RING_11
zf-RING_6
zf-RING_10
zf-Nse
Motif
Other DBs
NCBI-GeneID:
109231291
NCBI-ProteinID:
XP_019252456
UniProt:
A0A1J6IPS8
LinkDB
All DBs
Position
8:complement(39028537..39037987)
Genome browser
AA seq
512 aa
AA seq
DB search
MPAQKRYLSNYQDDNNNNEDDDENSPQNQHRRRKQSRRAAGEQTRANVEVQQVDEQEEEE
DEQTQAQDNDDEDDDDQEEINQSSEDDSEGSGTDPEAFDELIAVSRSEIRTNDFDERSFF
AQLFQVRKDVECPICLGIIKRTRVVMGCQHRFCRECIDKSMRLGNNECPACRIHCASRRS
LRDDPGFDTLIEAIYPDVEKYEEEELVFLEEERALNEQIQASIAQISQRQSEALIKRRKV
GKDIAASSAQRTPRNYHNAYSRRRRNSQGAEPERSDPNESENDDHDRNKDSPPKDERGTQ
TKFRKRRRRKGALATPTSPSAASPDGGHIETAAELPRENVGNSPGPALKPETLTWGRGGV
RSHSRHGSASGSRNARNTRISKLVDYLESVRTNDGELNIHLDLIPLDKQTTPSLKKPHLC
CRPSTSVEHLYEFVAQEIKSQVKDVELLAVKDSTTVNHSTLMDASNMLARVVSGSNVTLQ
SLERQETLEGINSSCPLNKNLILAYVQKNSEV
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgccagcccagaaacgctatttgtcgaattatcaagatgacaataacaacaacgaagac
gatgacgagaactctccccagaatcagcaccgccggcggaaacaatcccgacgtgctgcc
ggcgaacaaacacgagctaatgtggaagtgcaacaagtagatgagcaggaggaagaggaa
gatgagcaaacccaagcccaagataatgatgatgaggatgatgatgatcaagaggaaatt
aaccaatcgtctgaagatgattctgagggaagtggcactgaccctgaagcctttgatgaa
ttgatcgccgtgtcacgatctgagattcgcaccaatgatttcgacgagagaagttttttc
gcacaattatttcaagttcgtaaagatgtagaatgcccaatatgcttaggtattatcaag
agaactcgggttgtgatgggatgccaacaccgtttttgcagagaatgcatagataaatca
atgagactggggaataatgaatgccctgcttgccgcatacattgtgctagtcggcggtca
ttgagagatgatcctggatttgataccttaattgaggcaatatatccagacgttgagaag
tacgaagaggaggagcttgtctttcttgaagaggaacgggcactcaatgaacagattcaa
gcatccattgcccaaatttctcaacgccaatctgaagcactaattaagaggcgcaaagtt
ggtaaagacatagctgcttcctctgcacaaagaacacctcgcaactatcacaatgcttat
tcgagaagaagaagaaacagtcagggggctgaacctgagcgatctgatccaaatgagagt
gaaaatgatgatcatgacaggaataaagattcacctcccaaggatgagcgtggaacacaa
accaagttcaggaagcgccggaggcgcaaaggagctctggcaaccccgacttctccttca
gctgccagtccggacggtggacacattgaaactgcagcagaactacccagagaaaacgta
ggtaattctcctggacctgcactgaagcctgaaacacttacttggggaagaggtggtgtc
cgaagtcacagtcgacatggcagtgcaagcggtagcagaaatgctcgtaacactcgaata
tcaaagttagttgattatcttgaaagtgtccgaacaaatgatggagagttaaatatccat
cttgaccttattccattggacaaacaaacaacaccaagtctgaaaaagccccatctctgc
tgcaggccaagtacatcagttgaacacctctatgaatttgttgctcaggagataaaatca
caagtaaaagatgttgaattactggcagtaaaggacagtaccactgttaaccattcaacc
ttaatggatgcatcaaatatgctagcccgagtggtcagtgggtccaatgttactctgcaa
agcttggaaaggcaagaaactttggaaggaattaattcaagttgcccattaaataagaat
ctgatccttgcttacgtgcaaaagaattctgaggtatga
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integrated database retrieval system
