Nicotiana attenuata (coyote tobacco): 109231364
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Entry
109231364 CDS
T05870
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
109231364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nau03400
]
109231364
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
109231364
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
109231364
NCBI-ProteinID:
XP_019252552
UniProt:
A0A1J6ILP6
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Position
8:43949367..43961635
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AA seq
1159 aa
AA seq
DB search
MDSGAASFPRRRTRQQWDRYFVEVIEKKKRLSQSGNPPQSSSTCSVNIGDDVTASGDIRE
SSSATGKLTKAYTTCGVDYRKIGKWSEDESMVRSLDKGKKRMDNGNRMLSPGTCESMTKR
TFVQVISDDEEDSEEEEEEEEDSDPDVVVTGESAAASALNTGSGSGSWSNCVGLKSPIVT
TADEVVSSTSSMCRTRGPSELHKSEEPTDFEESEDDCVKSQESSDDTTESSESESEASSD
EDNDDPEDKDYRVNEPSSSSESDDEDDRVSCHIEPQDNEEGKGSDIRIGLDDDDDGRKES
EDDDPVEKQENGEGKGESNEGLLPGLVFEGEKHRGRAYLLRPRSLSKSKKRKLNHGNCSS
PILLSDDEESESPFEEGTKVDDSTRYAAQKDKVDNLVKKVAEKEKADESVKNAAQKDRKT
RKKCVLKDLDFVKFVVDSIRNVDDHDKLTSPEEKEQFPVKETLPLIFRFEDEDPLPPEKE
EWEKEIENLFAEMDMGILESCIGFTNPSLVDKVSGCQMGNHHLILDEQIGLICKVCSHVH
LESKYIYPAFAERNRGRHERKYFGESSPFLDVDGFRFDYPAAVHDSAIYMEGTVWDLVPL
HAKATMYPHQREGFEFMWKNIAGDIYLEKLSEPLSASRGGCIISHPPGTGKTRLTIVFLQ
AFLKQFPKCRPVIIAPPKLLSNWEAEFQKWEADIPFHNLNNNDFSCQEDEVTVGLYHCLS
HAGRKNKHPIRMVKLKSWAKSKSVLGISYDLFEKLTGENGDGYSKEIREILLTLPGLVVL
EEGHTPRNEQSLLYKAMTKVETQRRILLSGTVFQNNFKELYNTLRVVCPKFAAESEQKWA
SLSNSIDTNTRALEELRDMIAPLIHICSENVKMKSLPGIRDTLVYLKPTDLQKKLLNMIP
EYPGSFDFRNMVSLISVHPSLVANKKVFSDLESQLNERECRLDPNTGVKTKFVVELIRLC
DGMRERVIVFSQLLDPLRLIKEQLNSLFHWTLGREILYMDGELDVKQRQKSISSLNDPKS
DAKVLLASITACSEGINLIGASRVVFLDVHWNPSVEQQAVSRAYRNGQTKFVHVYCPVAS
KWEVNKIEQQTRKKYHSGVLLSRNEVNTCKTNPSCSVLEDNILESMVQHESLRHIFEELP
HEPRAYGFNSCNQPPKASI
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggattcaggggcagcctcttttccaaggaggaggactagacaacaatgggatagatat
ttcgtcgaggtaattgagaagaagaagaggttgagtcaaagtggaaatcctcctcagtct
tctagtacttgttctgtgaatattggagatgatgttacagcttctggtgatataagagaa
tcatctagtgcaacaggaaaactgactaaagcatacacaacttgtggagttgactacaga
aaaattggaaaatggtcagaagatgaaagtatggtaagaagcttggacaaaggtaaaaaa
aggatggacaatgggaatagaatgctcagtccaggaacttgtgagtccatgacgaaacgg
actttcgtccaggtaatatctgatgatgaggaggacagtgaggaggaggaggaggaggag
gaggacagtgatcctgacgttgttgtcactggggagtctgctgcggcgtctgctttaaat
actggatcaggttcaggatcttggtccaattgtgttgggttaaagagtcctattgtcact
acagcagatgaggttgtttcatctacctcaagtatgtgtaggacacggggtcctagtgag
ttgcataaatcagaggagccaactgattttgaggaatcagaggacgattgtgtaaaatca
caagagtctagtgatgatacaacagaatcttctgagtcagagtctgaagcttctagcgat
gaggataatgatgaccccgaagataaggattatcgggtgaatgagccatcaagttctagc
gaatcagacgatgaagatgatcgtgtgagttgtcatatagagcctcaagacaatgaagaa
ggaaaaggatctgatataagaattggtttagatgatgatgatgatggaagaaaggaatca
gaagatgatgatcctgtagagaaacaagaaaatggagaaggaaaaggggagtcaaatgag
gggctactacctggccttgtttttgagggtgaaaagcatagaggccgagcatatcttctt
cggccacgctcactttctaagtcaaaaaagaggaagttaaaccatggaaattgtagtagc
cccattcttctcagcgatgacgaggagtctgaatccccatttgaagagggcacaaaggtt
gatgactcaacgcgatatgctgctcaaaaggacaaagttgataacttggtgaaaaaggtt
gctgaaaaggaaaaggctgatgaatctgtgaaaaatgctgctcaaaaggacagaaagact
cggaagaagtgtgttcttaaggatctcgactttgtgaagtttgttgttgattctataaga
aatgttgatgatcatgataaacttacttctcctgaagagaaggaacaatttcctgtcaaa
gaaacacttccgttgatcttccggtttgaagacgaggaccctctccccccggagaaagaa
gaatgggaaaaagaaatcgagaatttatttgctgaaatggacatgggtatcttagaatca
tgtattggcttcacaaatccatctctggttgataaagttagcggctgtcagatggggaac
caccatcttattttagatgaacaaattggactcatctgtaaagtttgttcacatgtgcat
ctggagagcaagtacatctaccctgcttttgctgagagaaaccgggggaggcatgaaaga
aagtatttcggggagtcgtcaccgttcttggatgttgatgggtttagatttgattatcct
gctgcagtccatgattctgctatttatatggaaggaactgtgtgggatttagttcctctg
catgccaaagcaacaatgtatcctcatcaacgtgaaggatttgagtttatgtggaaaaat
attgctggagatatataccttgagaagctgagcgagcctttatctgctagtaggggagga
tgcataatctcacatccacctggaaccggaaaaacccgtctgaccatagtatttcttcag
gcatttctgaagcagtttccaaagtgtcggcctgtaatcatagctccgcccaagttgctg
tctaactgggaagccgagttccagaaatgggaggcggacattcccttccacaacttgaac
aacaatgatttctcatgccaagaagatgaagtcacggttggtctctaccactgtttatcc
catgccggaagaaaaaacaaacaccctatacgtatggtgaagctgaaatcctgggctaaa
agtaagagtgtattggggatcagctatgacttgttcgagaagctcactggagaaaatgga
gatggttattccaaagagattagagaaatacttctaacattacctggtcttgtggtcctc
gaagaagggcatactcctcggaatgagcaaagccttttgtataaagctatgactaaggtt
gaaacgcagaggcgcatacttttgtctggaactgtcttccagaataactttaaagagttg
tacaacaccctccgcgtagtttgtccaaagtttgctgcagaatctgagcagaaatgggct
tctcttagcaattctattgacacgaatacccgagcattggaagagcttagggatatgatt
gcaccactaatccatatatgtagtgaaaatgtaaagatgaaaagccttccgggtataagg
gacacactggtatacttgaagcccacagatttgcagaagaagttgctcaatatgattcca
gagtatccaggctcatttgactttcgaaatatggtgtctctgatctctgttcatccttca
ttagtggcaaataagaaggtgttctctgacttagaaagtcagctaaatgaaagagaatgt
cggttggatccaaatactggagtaaaaacaaaatttgtcgttgaactaatccgactctgt
gatggcatgagagagagggttatagtattcagccagttacttgatcctctaagactgatc
aaggagcaactcaattctctctttcattggactttaggccgagagattctatatatggat
ggggaacttgatgtgaagcagcgccagaaatcaataagttctcttaatgatcctaagagt
gatgcgaaagtgctgctcgcatcaataacggcctgttcggaaggaataaatcttataggg
gcctcaagagtagtttttcttgatgttcactggaatccctcggtagaacagcaagctgtc
agtcgagcctacaggaacggtcagactaaatttgtgcatgtttactgtccagtggcatcg
aaatgggaggttaacaagatcgaacagcagacgaggaaaaaatatcattctggtgtactt
ttgtctaggaatgaagtgaatacttgcaagacaaatccttcttgttctgtgctggaggac
aacatactagaatccatggttcagcatgagagtctccgccatatttttgaagagctacct
catgaaccccgtgcctatggctttaattcttgtaaccaacctccaaaagcgagcatttaa
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