Nicotiana attenuata (coyote tobacco): 109231397
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Entry
109231397 CDS
T05870
Name
(RefSeq) protein DAMAGED DNA-BINDING 2
KO
K10140
DNA damage-binding protein 2
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03420
Nucleotide excision repair
nau04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109231397
09124 Replication and repair
03420 Nucleotide excision repair
109231397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nau04121
]
109231397
03400 DNA repair and recombination proteins [BR:
nau03400
]
109231397
Ubiquitin system [BR:
nau04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
109231397
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
109231397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
Beta-prop_EIPR1
WD40_Prp19
Beta-prop_EML
WDR55
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_EML_2
WD40_WDHD1_1st
WD_LRWD1
EIF3I
WD40_RFWD3
Beta-prop_IFT140_1st
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
109231397
NCBI-ProteinID:
XP_019252597
UniProt:
A0A1J6IXK4
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Position
8:complement(46267994..46274119)
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AA seq
553 aa
AA seq
DB search
MPPQTRRSSFPKVVIERDTESEESSSEDEAIEEEEEEEANVVVPEETIEEEASESKKKGK
TPITITLKKVCKVCKKTGHEAGFRGATYIDCPMKPCFLCKMPGHTTMTCPHRVATEYGIV
PAPRKNTTTSLEFVFQRQLQPRLPPIKPAYVIPDQVHCAVIRYHSRRVTCLEFHPTNNNI
LLSGDKKGQLGIWDFGKVHEKTIYGNIHNCILNNMKFNPTNGGSIYSASSDGTISCTDLE
TGISLSLMNLNPNGWEGPSRWRMLYGLDVNSDKSVVLVADNFGYLYMADMRSNNIISKPT
LIHKKGTKVVGLNCNPLQPDLFLSCGNDHFARIWDMRRLEAGSSLYNLEHKRVVSSAYFS
PQSGSKILTTSLDNRIRVWDSIFGNLDYPSREIVHSHDFNRYLTAFRAEWDPKDSSESLV
VIGRYISENYDGAALHPIDFINISTGQLVAEVMDPNITTISPVNKLHPREDILASGSSRS
LFIWRPKKLSNIAQPREEKRILLCGEASKKHTKKHDHNSDDDSDNDIFRGKNKGLKQKKL
PLKLSSYSSRKSR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgcctccacaaaccagaagaagttcgtttccgaaagtggtgatcgaaagagacaccgag
tccgaggaaagctcgtccgaggatgaggctattgaagaagaagaagaagaagaagctaat
gtagttgtacctgaagagacaatagaagaagaggcgtcggagtcgaagaagaaagggaaa
acacccatcactattactctcaagaaagtttgcaaagtttgcaagaaaacgggtcatgaa
gcagggtttaggggtgccacttacattgattgcccaatgaaaccatgttttctctgcaaa
atgcctgggcacaccacaatgacttgccctcaccgagtagctacagaatatggaatagtc
ccagcgccacgcaagaacacaactacttctttggaatttgttttccaacgccagcttcaa
ccacggcttcctccaatcaagccagcttatgtgatcccagatcaagtccactgtgcagtt
atcaggtaccacagtaggcgagtcacatgcttggagtttcatcctacaaacaacaatatt
cttttatctggtgataagaaaggccaacttggtatctgggattttggtaaagtacatgaa
aagacaatatatgggaacatacacaattgtatactcaacaacatgaagttcaacccgaca
aatggtggttcaatatattctgcttcatcagatgggacaataagttgcactgacctggag
actgggatttccttgtcactaatgaaccttaatccaaatgggtgggagggaccaagccgt
tggaggatgctttatgggttggatgttaactcagataaaagtgttgtccttgttgctgat
aattttggatatctgtacatggctgatatgcggagcaataacataataagcaaacctact
ttgattcacaagaaaggaactaaagttgttggtctgaactgcaatcctcttcaaccagat
ctatttctgagctgtgggaatgatcactttgctcgaatatgggatatgcgccgcttggaa
gctgggtcttctctttacaatcttgaacataaacgtgttgttagttctgcatatttttct
ccacaaagtggcagcaaaatacttactacttcgctcgataatcggatccgtgtgtgggat
tcaatctttggcaaccttgattatccaagccgagaaattgttcacagtcacgattttaac
cgatatcttacagcattccgagcagaatgggatccaaaggactcatcagagtctcttgtt
gtcatcgggcgttacattagtgaaaattatgatggagctgctttgcatcccattgacttt
atcaacatcagtactgggcagttggttgccgaggttatggacccaaatataacaactatt
agtccggtgaacaagctacatccacgtgaagatattctggcatctggtagttcaaggtct
cttttcatttggaggcctaagaagctgtctaacattgcacaacctagagaagaaaagaga
attttgttatgcggggaggccagtaagaaacataccaagaagcatgatcataacagtgat
gatgattctgacaatgatatatttagaggcaagaataagggcctcaagcagaagaaactt
ccattaaaattgtcttcatatagttcccggaaaagccgttga
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