Nicotiana attenuata (coyote tobacco): 109231792
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Entry
109231792 CDS
T05870
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109231792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109231792
Enzymes [BR:
nau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
109231792
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109231792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_24
AAA_22
FtsK_SpoIIIE
ABC_tran
ATP_bind_1
DUF1611
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
109231792
NCBI-ProteinID:
XP_019252974
UniProt:
A0A1J6IU45
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All DBs
Position
1:complement(108568490..108579442)
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AA seq
439 aa
AA seq
DB search
MAYGGTNVNPLAATGGSTTVRQVKLDKECELRIETSLDSPLRLRLLTGTAEIFGTEIPPE
IWLTIPPRLKFAVFTWYGATIEMDGLTETDYTADETPMISYINVHAVLDGRRNRAKASPS
DSDTSQGPRVVVVGPTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITIPGCVAATP
IELPIDPVEGIPLEMPMVYFFGHVTPSANIDHYKVLVKELAQTLERQFSGNAESRASGMV
INTMGWIEGVGYELLLHAIDTFNATVILVLGQEKLCSMLKDVLKNRPNVDVVKLQKSGGV
VSRNAKVRQKARGYRIREYFYGPSNDLSPHSNVVNFGDLFIYRIGGGPQAPRSALPIGAE
PAADPTRLVSVSINRDLLHLVLAVSYANEPDQIISSNVAGFIYVTDVDMHRKKITYLAPC
AGELPSKYLIMGTLTWIEN
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcttatggaggcacaaatgtcaatccattggcagcaacaggtggttcaacaactgtg
aggcaggtgaagctggataaagaatgtgagctccgaattgaaaccagccttgactcgccc
ctccgtctccggctcctcactggaacagctgagatttttgggactgaaatccctcctgag
atctggcttaccatccctccaagactcaaatttgctgtttttacttggtatggagcgaca
atcgagatggatggtctcactgaaactgattatacagcagatgagacgccgatgataagt
tatataaatgttcatgctgtacttgatggacgaagaaatcgtgccaaagcttcacctagt
gattctgacacttctcagggcccgagggtagtcgtcgtgggacctacagattctggcaag
agtactttatcaaggatgcttcttagttgggcagcaaaacagggatggaaacctactttt
gtggatttggacataggtcaaggatcaataactattccaggatgtgttgctgctacgcca
attgagttgcctattgatccagttgaaggaattccgcttgaaatgcctatggtctacttc
tttggtcatgtgactcctagtgccaacatagatcactacaaggtactcgtcaaggagcta
gctcagactctggagaggcaattttctggcaatgctgaatctcgagcttcaggcatggta
ataaatacaatgggatggatagagggagttggttatgagttgctactccatgcgattgat
acattcaatgccacagttattcttgtcttgggtcaggaaaaactttgtagcatgctaaaa
gatgtattgaagaatcggcctaatgtggatgtggtgaaacttcaaaagtccggtggtgtt
gtatcaaggaatgcaaaagtacggcagaaagcaaggggctacagaatacgggagtacttt
tatggcccttcaaatgacctttcaccacattctaatgtagtgaactttggtgacttgttc
atctaccgaatcgggggtggaccacaggctccacgctcagctttacctattggtgcagag
cctgctgcagatcctacaagattggtttctgttagtatcaaccgggacttgctccatttg
gttcttgccgtctcatatgccaatgaaccagatcaaataatctccagtaatgttgccgga
ttcatctatgtcacagacgttgacatgcataggaaaaagataacatatcttgcaccatgt
gctggggaacttccgagcaaatacctaatcatgggaaccttaacatggattgaaaactga
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