Nicotiana attenuata (coyote tobacco): 109232225
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Entry
109232225 CDS
T05870
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109232225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109232225
03009 Ribosome biogenesis [BR:
nau03009
]
109232225
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109232225
Spliceosome [BR:
nau03041
]
Complex A
U1 snRNP components
U1 related factors
109232225
Complex B
109232225
Ribosome biogenesis [BR:
nau03009
]
Eukaryotic type
Pre-60S particles
Helicases
109232225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Pox_F16
Motif
Other DBs
NCBI-GeneID:
109232225
NCBI-ProteinID:
XP_019253458
UniProt:
A0A1J6I2G7
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All DBs
Position
9:32361906..32370773
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AA seq
602 aa
AA seq
DB search
MAVVTASSAGPSYAPEDPTLPKPWKGLVDGTTGFIYFWNPETNDTQYERPVPSSHAVSAP
AHKSSVFVNSSVEKPSQGQRYDPDSGHNRGSNNKIARSSSDHFHDGTSVHESYGSLGVGS
DISQESYCRHNEISVTGGDVPAPLTSFEATGFPSEIVREMRQAGFSAPTPIQAQSWPIAL
QGRDIVAIAKTGSGKTLGYLMPAFIHLQHRRKNPQLGPTILVLSPTRELATQIQAEAVKF
GKSSRISCTCLYGGAPKGPQLRDLSRGVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEA
DRMLDMGFEPQIRKIVKEVPVQRQTLMYTATWPKGVRKIAADLLVNSVQVNIGNVDELVA
NKSITQYIEVVLPMEKQRRVEQILRSKEPGSKIIIFCSTKKMCDQLSRNLTRNFGAAAIH
GDKSQGERDYVLSQFRTGKSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRT
GRAGASGLAYTFFSDQDSKHALDLVKVLEGANQCVPTELRDMASRGGGMGRARNHWGSGP
GGRGGPYNSSFVGRNGGHGYDRGSRDSDRYGTYNADASRKRSRSRSPNIGSGWSGKKSRF
TD
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgtaactgcatcttccgctggtccaagttatgcaccagaagatcctaccctc
cccaaaccttggaaagggctagttgatggtacgactggattcatctacttctggaatcca
gagaccaacgatacccaatatgagaggcctgttccctcttcccatgcagtgtctgctcca
gcacataagtcatctgtatttgtaaattcatctgttgaaaagccttctcaaggtcagcgc
tatgatccagacagtggacacaacagaggtagcaataacaagattgcaagaagcagttct
gatcattttcatgatggaacatctgtccatgaaagctatggttctctaggtgtaggaagt
gacatatctcaagaatcctactgccgccacaatgaaatctctgttacgggaggtgatgtt
cctgctcctttgacatcatttgaagcgactgggtttccttcagagattgtgagggagatg
cgtcaagctgggttttcggctcctactccaatacaggcacaatcctggcccattgccctt
cagggccgtgatatagtggctattgcgaagactgggtctggcaaaactctgggttacttg
atgcctgcctttattcatctacaacatcgtcgcaagaatcctcaattaggcccaactatt
ttggtactatcaccaacaagagaactagccacacagatacaagctgaagcagtgaagttt
gggaaatcgtcaaggatatcttgcacgtgtctgtatggaggtgcaccaaaaggtcctcaa
ctacgggatctgagtaggggtgtagatattgtcgtcgccactcctggtcgtttgaacgac
atcttggagatgagaagagttagccttggtcaagtttcttacttggtgttagatgaagcg
gatcgtatgctggacatgggatttgaacctcagataaggaagattgtgaaggaggtgcct
gtgcagaggcaaacattgatgtatacagctacatggccgaagggggttcgtaagattgct
gctgatctattggttaattcagttcaagttaatattggaaatgttgacgagcttgttgca
aacaagtctatcacgcagtacattgaagtcgtgctgccgatggagaaacaacggcgagta
gaacaaatcttgagatccaaagaaccagggtcaaaaatcattattttctgttcaacaaag
aaaatgtgcgaccaactatctcgcaatcttactcgcaattttggagcagctgcaattcat
ggggataaatctcagggtgagagagattatgtattaagccagtttcgcaccggcaagtct
cctgtgcttgtggctactgatgttgctgcgcggggtttggacatcaaagatatcagggtg
gtgataaactatgacttcccaactggaatagaagattatgttcacagaattggtagaaca
ggccgggcaggagcatctggtctggcctacacatttttctccgaccaggattctaagcat
gctttagatcttgtcaaagttttagaaggtgcaaatcaatgtgtgccaaccgagctacgt
gatatggcttctcgcggtggtggtatgggaagggctaggaatcactggggttctggccca
ggtggacgtggaggaccctataattccagctttgttggacggaatggaggacatggttat
gaccggggatcacgtgacagtgacagatatggtacctacaatgcggatgcttctcggaag
cgcagtcgtagcagaagcccaaatataggttcaggatggagtggtaaaaagagccggttt
actgattga
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