Nicotiana attenuata (coyote tobacco): 109232243
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Entry
109232243 CDS
T05870
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109232243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109232243
03009 Ribosome biogenesis [BR:
nau03009
]
109232243
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109232243
Spliceosome [BR:
nau03041
]
Complex A
U1 snRNP components
U1 related factors
109232243
Complex B
109232243
Ribosome biogenesis [BR:
nau03009
]
Eukaryotic type
Pre-60S particles
Helicases
109232243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
109232243
NCBI-ProteinID:
XP_019253481
LinkDB
All DBs
Position
9:complement(34593862..34602680)
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AA seq
1156 aa
AA seq
DB search
MATAEAGAASLGPRYAPDDPTLPQPWKGLIDGSTGLLYYWNPETNVTQYEKPSALPPPLP
PGQPPEAATPKLAPIPGASTVQQNDAHGQQSQQACTQQGQQMTQMSQHSQVTQQLPHGSQ
GVSIGQQQGSAAGPAMQQVPFTLQFRPQMIQQPGHQMPSQMGQTPNQPGPHVSQPVMQQI
IPQQLGPQTQAFPGVQMGQPHGYQFSHHQTPQHITYPQNLPPQGQQIPQQNQHVLQNQQL
SHQQEHKVGFQQREDVDFPHGRQVGFSPQQVQQTGASSAQNLPVGTGSVIRPQMSAQPAQ
ALPFGGSSVNIQQPSSLGQWQQNANDSGHKPPGPPFPSEMGSGMVHGQELDMPPVGSKGY
EENSFGRGGNEYYYTSNMDGRIRPPPQQPKLAAIPIARNQHETRMGDPPLQNPAPVLPSG
FNSAGGPPMQNIYGQAAGGPPFSNPNLMGPPAALTGPPGAIHPSPVEVYLQKHEVTATGG
DVPAPFMTFEDTGFPPEILREIHVAGFTSPTPIQAQTWPIALQNRDIVAIAKTGSGKTLG
YLIPAFVHLTRRRNNPQNGPTVLVLAPTRELATQIQDEALKFGRASRVSCTCLYGGAPKV
HQLKELERGADIVVATPGRLNDILEMKRIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNE
IPPQRQTLMYTATWPKEVRKIAGDLLRNPVQVNIGNVDQLAANKSITQYVEVVPQMEKQR
RLEQILRSQERGSKAIIFCSTKKLCDQLARSVGRSFGAAAIHGDKSQGERDWVLNQFRSG
KTPILVATDVAARGLDIPDIRVVINYDFPTGIEDYVHRIGRTGRAGATGISYTFLSDQDW
KYAPDLVKVLEGANQHVPPNVREMALRAGGRDRGGMNRFDLVEGDGSRTRWDSGGRGGMR
DGAFGGRGGMRDGGFGGRGGMRDGGFGSPGGMRDGGFGGRGGRESNFGGRGARESNFGGR
GGRDGHFGGRGGMRDNYFGGRGGRGGAVGGWDRNARYDSSDMRGRDRGRGRGHFDNRRDM
PSRSRGRSYSPSPERVRTWGSRSRSRSRSRSRSRSRSYSRSYSRSRSYSPRHSRSRSRSR
SRSRSHDRYQRRPRQSKFDQMEPDPGMSNVQVAPSGMPPLSVGQPIDGISGAAQVEFKPN
MEVAPESGMSPMSPGT
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgctgaggcaggtgcggcttccttaggacctcgttatgcacccgatgatcca
actttaccgcaaccttggaagggcttaattgatggcagtactgggttattgtactactgg
aatccagaaactaatgttactcaatatgagaagccatcagctttaccccctccactgccg
cctggtcaacctccggaagctgctacacctaagttggctcctataccaggagctagtaca
gtgcaacaaaatgatgctcatggccaacaaagccagcaggcgtgtactcaacaaggccaa
caaatgacacagatgtcccaacattcacaagtaacacaacagctaccacatggatcacaa
ggtgtttcaatagggcagcaacaaggatcagcagcgggtcctgctatgcaacaggtaccc
tttacgctgcagtttcgaccccaaatgatccagcagcctggtcatcagatgccatctcaa
atgggacaaactcctaaccagccaggcccacatgtttctcaaccagtgatgcaacaaata
attccacaacaacttggcccccaaacacaagcattcccaggtgtacagatgggacaacca
catggttatcaattttctcatcaccagacaccacagcatattacgtatccacagaacttg
cctccacaaggacaacaaattccacagcagaatcagcatgttctccagaatcaacagctc
tcccatcaacaagagcataaagtgggatttcagcaaagagaagatgttgatttcccccac
gggagacaagttgggttttcgccacaacaagttcagcaaactggtgcatcctctgctcag
aatctgcctgtggggactggttctgttatcagacctcagatgtccgctcagcctgctcaa
gctttgccgtttggtgggtcttctgtaaatattcaacaaccatcatctttggggcagtgg
cagcaaaatgcaaatgattcaggtcacaagccacctggtccaccatttcccagtgaaatg
ggctcaggtatggtacacggccaggagctggatatgcctccagttggatcaaagggttat
gaggaaaactcatttggaagaggtggaaatgagtattattacaccagtaacatggatggt
cgaattaggcctccgcctcagcaacccaagcttgcagctatacctatagcaagaaatcag
catgaaacgagaatgggtgatcctccgcttcaaaatccagcaccggttcttcctagtggg
ttcaatagtgcaggtggccctccaatgcaaaatatctatggtcaagcagctggtggcccc
ccgttttcaaatcctaacctcatggggccacctgcagcactcactggacctcctggagct
attcatccgtcgcccgttgaggtttaccttcagaagcatgaagtgactgcgacaggtggt
gatgtccccgctccattcatgacatttgaagatactggcttccctccagaaatactcaga
gagattcatgttgcgggattcacttcgcccactcccattcaggcacaaacatggcccatt
gcgttgcaaaatagggatatagtagccattgccaagacaggttctggcaaaacattgggc
tatctgattcctgcatttgtccaccttacgcgacgccgcaacaatcctcaaaatggccca
acagtactggttttagctccaacacgagagcttgcaacacaaatacaagatgaagcgctt
aaatttggccgagcttcaagggtttcttgcacatgcttgtatggaggtgcaccgaaggtt
caccagttaaaagaactagagcgcggagcagacattgttgttgcaactcctggtcggctt
aatgacatccttgaaatgaaaagaattgactttaggcaggtttctcttctcgtgctagat
gaggctgatcgaatgcttgacatgggttttgaacctcagatccgcaagattgtaaatgag
atacccccacaaagacaaacacttatgtacacagcaacctggcccaaagaagtgcgtaaa
atagctggcgatcttcttcgaaatcctgttcaggttaatatcgggaatgttgatcagctt
gcagcaaacaagtctatcacacagtacgttgaagtagtcccgcaaatggagaagcagaga
cggttagagcagattcttagatcccaagaaaggggttctaaagctattatattctgttcc
acaaaaaagttgtgcgaccaacttgcacgcagcgttggccgaagctttggagccgcagct
attcatggagacaagtcccagggtgagagggactgggttctcaatcaatttcgctctggt
aagaccccaattttagtagcaactgatgttgctgctagaggactggacatacccgatata
agagtggtgatcaactatgattttccaactgggattgaggattatgttcatcgaattgga
agaactggtagggctggtgcaactggtatttcatacacctttttatctgatcaggactgg
aaatatgctccagatctggttaaagttctggaaggcgcaaaccagcacgtgcctccgaat
gtaagggagatggctttacgtgctggtggcagggatagaggtggaatgaaccgatttgat
cttgttgagggtgatggtagccgcacacgctgggattctggtggccgtggtgggatgagg
gatggtgcgtttggtggccgtggtgggatgagggatggtgggtttggtggccgtggtggg
atgagggatggtgggtttggtagtcctggtgggatgagggatggtgggtttggtggccgt
ggtggaagggagagcaactttggtggccgtggtgcaagggagagcaactttggtggccgt
ggtgggagagatggtcactttggtggccgtggtgggatgagggacaactattttggtggc
cgtggtggcaggggtggtgcagttggtggttgggacaggaatgctcggtatgatagctca
gatatgcgtggacgtgacagaggccgagggcgtgggcattttgacaatagaagagacatg
ccgagtcggagtcgaggaagaagttacagccctagtccggagagggtgcgaacatggggc
agcagaagcaggagtcgcagcagaagcaggagtcgcagcagaagcaggagctatagcagg
agttacagccggagccgcagttatagcccaaggcatagtcgcagccgcagccgtagccgt
agccgcagccgtagtcacgatagatatcaaaggaggccacgccaatctaaattcgatcag
atggaaccagatccagggatgtcaaatgttcaggttgctccatctgggatgcctccattg
tctgtaggtcaaccaattgatggtatttctggagctgcacaagtggaatttaaaccgaat
atggaggtagctccagaatctggtatgtcgcccatgtctccaggaacatga
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