Nicotiana attenuata (coyote tobacco): 109232437
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Entry
109232437 CDS
T05870
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109232437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109232437
Spliceosome [BR:
nau03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
109232437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
WDR90_beta-prop_4th
NBCH_WD40
PRP4
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_Vps41
WD40_RFWD3
WD_LRWD1
Beta-prop_SCAP
eIF2A
Beta-prop_Nup120_160
Beta-prop_SPT8
WD40_like
Nbas_N
Motif
Other DBs
NCBI-GeneID:
109232437
NCBI-ProteinID:
XP_019253743
UniProt:
A0A1J6I373
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Position
9:complement(50028244..50034897)
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AA seq
576 aa
AA seq
DB search
MDAEEEIPASTAEPSTLVGDNSTVVNAIGAINLQPVPPVAPPVAPTVILPPVVPAIAPRP
AVPTPIPPPLAPLPVRPPVLRPPVAQNGEVQASDSDSDEEMGSDRGTGGSVQEYEISEES
RIVRERQEKAMQELLMKRRAAALAVPTNDMAVRARLRRLGEPITLFGEREMERRDRLRTL
MARLDAEGQLEKLMKAHEDEEAAASAAPAEEEDIQYPFYTEGSKALLDARVEIAKYSLVK
SALRVHRARRKRDDPDEDVDAEVDWALKQAGSLALDCSEIGDDRPLWGCSLSHDGKMLAT
CSLSGIAKLWSMPQVQKLSTLKGHTERATDVVFSPTSNYLATASADRTAKLWNSEGSLLR
TFEGHLDRVARIAFHPCGKYLGTASFDKTWRLWDVESGEELLLQEGHSRSVYGLSFHHDG
SLVASCGLDALVRVWDLRSGRSILALEGHVKPVLGVSFSPNGYHLASGGEDNTCRIWDLR
QRKSLYIIPAHSNLISQVKFEPQEGYFLVTASYDTTAKVWSSRDFKPVKTLSGHEAKVTS
LDVAGDGQHIVTVSHDRTIKLWSGKNIEKEEKMDTD
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgaggaggaaattcctgcttcaactgcagaaccttcgactctagttggtgat
aattcgactgtggttaatgctataggagcgattaaccttcaaccagttccacctgtcgct
ccaccggttgctccaacagttatccttcctccagttgtgcctgcaattgctccaaggccc
gcagtccctacccccattcctcccccattagctccattgcctgttcgtccacctgtcctt
aggcctccagtagcacagaatggagaagtgcaagcgagcgattcagattctgatgaagaa
atgggatctgatcgtggtacggggggctcagtccaagaatatgagatatctgaggagagc
agaatagtaagggagaggcaggagaaagccatgcaggagcttctgatgaagcgacgtgca
gctgcgctagctgttcctacaaatgatatggcagttcgagctcgccttcggaggcttggt
gagcctataactctctttggcgaaagggagatggaaagaagggaccgtctgcggacgctt
atggcgaggcttgatgcagaaggacagctggaaaagctgatgaaagcgcatgaggatgaa
gaagctgcagcttctgctgcaccagcagaggaggaggatattcagtaccccttctacact
gaaggatcaaaagcacttttagatgctagggtagaaattgcaaagtattctttagttaag
tcagccttacgtgtccaccgcgcaaggaggaaaagggacgatccagatgaagatgtggat
gcagaggttgattgggctttaaagcaagcagggagcctcgcccttgattgcagtgaaatt
ggagacgatcgacccctttggggatgctcgctttcacatgacggaaagatgcttgctacc
tgttctctgagtggaattgcaaagttatggagtatgcctcaagtgcaaaagctttccact
ctaaagggtcacactgaacgagctactgatgttgtgttctctccaacaagcaattattta
gctactgcatctgctgataggactgcaaagttatggaactcggaagggtctcttctcagg
acgtttgagggacatttggaccgtgtagctcggattgccttccatccttgtgggaagtac
ttgggcacagctagctttgacaaaacttggagattatgggatgtagaaagtggtgaagag
ttgcttttgcaagaaggtcacagtaggagtgtgtatggattgtcgtttcaccatgatggt
tcattggtggcatcatgtgggctggatgcacttgttcgagtgtgggatttaaggagtgga
cgaagtattcttgctctggaaggtcatgtaaaaccggttcttggtgtcagcttttctccc
aatggttatcatttggcaagtggtggtgaagataatacatgccgtatttgggacttaagg
cagagaaaatctttgtacataattcctgctcactccaatcttatttctcaagttaaattt
gaacctcaggagggatactttttggttacagcgtcctatgatacgacggctaaggtatgg
tcatcaagggatttcaaacctgtgaagacactatctggtcatgaagcaaaagtcacgtca
ttggatgtagcgggagatgggcaacacattgtcactgtatctcatgatcgaacaatcaag
ctatggtcaggcaaaaacattgagaaggaagagaaaatggataccgactag
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