Nicotiana attenuata (coyote tobacco): 109233026
Help
Entry
109233026 CDS
T05870
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nau03021
]
109233026
03036 Chromosome and associated proteins [BR:
nau03036
]
109233026
Transcription machinery [BR:
nau03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
109233026
Chromosome and associated proteins [BR:
nau03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
109233026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
Tex_central_region
HHH_9
SH2
HHH_3
Tex_N
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
109233026
NCBI-ProteinID:
XP_019254307
UniProt:
A0A1J6IR41
LinkDB
All DBs
Position
10:complement(13107557..13117590)
Genome browser
AA seq
1641 aa
AA seq
DB search
MAGKNVISDDEDEVGIEEEERDEEPVDGDAVDERDEEDEDEEEDEEGQDEYEKDGFIVDD
VEEEEDEEDRADSDDERQKKKKRKKRESERSYMLDEDDYELLQESNIAVPRPKLESKKFK
RLKKAQRDMDDARSGFSEEEEFDETGRRGRTAEEKLEHSLFGDDEGPPLEDIAEEEERLE
EEEDADIGEEDEMADFIVDEEEVDEHGAPIRRKKVNKKKSRQASGVSSSALQEAHDIFGD
VDELLLRRKQDRAKSGRHDESGEWSERRLEDEFDPTILAEKYMTEKDEHIRKIDVPERMQ
LSEESTGPVPPEAISVEESNWIYNQLAAGVVPFFKIKKKDSGKSDEGSELPIDKDDIMRF
LDLMHGQKLDVPFIAMYRKEECMSLLKDPEEDETSDDGPNNSDKKPAVRRQKVLWAIQDL
DRKWLLLQKRKSALELYYKKRFQEESRRVYDETRLKLNQQLFESIIKSLQAADCEREVDD
VDSKFNLHFPPGEVGVDEGQYKRPKRKSQYSICSKAGLWEVASKLGYSAEQFGSHMSCES
MGDLLEDARETPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPSVRKQVRKTFMDDA
KVSTSPTPDGNVVIDSFHQFAGVKWLRDKPLSDFEDAQWLLIQKAEEEKLLKVTIKLPEV
VLDKLITDSRDHYLSDGVSKSAQLWNEQRKLILEDAFFNFLLPSMEKEARSLLTSRAKSW
LLLEYGKLLWNKVSVGPYQRRESDVGSDEELAPRVMACCWGPGKPATTFVMLDSSGEVLD
ILYAGSLSLRGQNVNDEQRKKNDQQRLLKFMMDHQPHVVVLGAVNLSCTRLKEDIYEIIF
KMVEDNPRDVGHEMDNLNIIYGDETLPHLYENSRISVDQLPGQSGIVRRAVALGRYLQNP
LAMVATLCGPGREILSWKLSTLDSFLTPDEKYGMVEQVMVDVTNQVGVDLNLAISHEWLF
APLQFISGLGPRKAASLQRSLVRQQTIFTRKDILTEHHLGKKVFVNAVGFLRVRRSGYTA
NSNTYIDLLDDTRIHPESYGLAQELAKDIYLNDIGEENNDDDELLEMAIEHVREKPHLAR
LLEVPNYAKSKDRQDKEETLNDIRLELMQGFQDWRRQYVEPSQDEEFYMISGESEETLSE
GRIVQATVRRVQPQKAICALESGLTGILTKEDSSDDWRDVNDLTEKMREGDILTCRIKSI
QKNRYQVFLSCKENDMRNNRYQNNQNLDPYYHEDRSSLQAEKDKARKEKELAKKHFKPRM
IVHPRFKNITADEAMEFLSDKEPGESIVRPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKE
HKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVTHLKAMLNYRKFRKGSKAEVDELL
RIEKSEYPMRIVYSFGISHEHPGTFILTYIRSSNPHHEYVGLYPKGFKFRKRMFEDIDRL
VAYFQRHIDDPHDSAPSIRSVAAMVPMRSPAGGGSGFGGSWGGSSNDSGRRGGQSGDRDS
RPGRNDYRNRSSQDNPSGLPPRPYGGGGRGRGRGRGRGTYGRGRENNDNDGQDSDYGTQK
WGSKEGGGGWGAEVQNSPARDTFSGGWSGGGSGAGGGSGDGGGWGGNGGGAGWGQDTGGQ
SDDSGWGGGKKGSQSGGSGGW
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaaacgtgatctccgacgacgaagacgaagttggaattgaggaggaagag
agggatgaagagcctgttgatggagacgcagtagatgaacgggacgaggaggatgaagat
gaagaagaagatgaagaaggtcaggatgaatatgagaaagatgggtttatagtagatgat
gtggaagaggaagaggatgaagaagatagagctgacagcgatgatgagaggcaaaagaag
aagaaaaggaagaaaagggagtcagagaggagttacatgcttgacgaagatgattatgaa
cttctccaggaaagcaacattgcggtgcctcgtccgaaactcgagagcaaaaagttcaag
cggctaaaaaaagctcagagggatatggacgatgcgcgttctggtttttctgaggaggag
gagtttgacgaaactgggaggcgtgggcgtacagctgaggaaaagctcgagcatagctta
tttggcgatgatgaagggccaccactcgaggatattgctgaggaggaagagcggctggag
gaagaagaggatgctgacattggagaggaagatgaaatggccgactttattgttgatgaa
gaagaagttgatgaacatggtgctcctattagaaggaagaaggtgaacaaaaagaagtcc
aggcaggcatcaggagtttcgtcttctgctctccaggaagcccatgacatatttggtgat
gttgatgaacttttattgcgtcgaaaacaagatcgggcaaaatcaggcaggcacgacgaa
tctggtgaatggagtgaaaggagacttgaagatgaatttgatcctactattctagctgag
aagtatatgacagagaaggatgagcacattcggaaaatagatgtccccgaaagaatgcag
ttatctgaggaaagcactggtcctgtgccacctgaagctattagtgtggaagagagtaac
tggatctacaatcagcttgctgccggcgttgtgcctttctttaagattaagaagaaagat
agtgggaaaagtgatgaagggagtgagctaccaatagataaagatgacattatgagattt
ctggatttgatgcatggacagaagcttgatgtcccattcattgccatgtaccggaaagag
gaatgcatgagcttattaaaggatccagaagaggatgaaactagtgatgatggccccaat
aattctgacaaaaagcctgctgtaagacggcagaaggtgctttgggcaatccaagattta
gacagaaagtggctcctccttcagaagcggaagtctgcgctcgagttatactataagaag
cgctttcaagaagagtcccgtagggtgtatgatgaaacacgtctaaagttgaatcaacaa
ctctttgaatcaattataaaatcactccaggcggccgactgtgaaagagaggttgatgat
gttgactcaaaatttaacttgcacttcccaccaggagaggttggtgtggatgaaggacaa
tataagaggccaaagaggaaatcacaatacagtatttgcagcaaagccggcttatgggaa
gttgcaagcaagttgggatatagtgccgaacaatttggttcacacatgtcttgtgaaagt
atgggggatttgctggaggatgctagggaaacaccagaggagatggcgtcaaacttcacc
tgcgcaatgtttgaaacaccacaagctgtgcttaaaggcgctagacacatggcggcagtt
gagataagctgtgaacctagtgtccggaaacaggtgcgtaagacctttatggatgacgcc
aaagtatcaacgagtcctactcctgatgggaatgtggtgattgattccttccatcaattt
gctggagtaaagtggttacgggataaacctctctctgattttgaggatgcacagtggctt
ctcatacagaaggctgaagaggagaagctcctcaaagttactatcaagttgcccgaagtt
gttcttgacaagctgataactgactcgagagatcattatctcagtgatggtgtgagtaaa
tctgctcagttatggaatgagcagagaaagttaatacttgaggatgcatttttcaatttt
cttctgccttcgatggagaaggaagctaggtcgttgctgacgagtagagctaagagctgg
ctgcttttggaatatggaaagttgttgtggaataaagtgtctgtgggaccatatcaacgc
agagaaagtgatgtcggctctgatgaagagcttgcgcccagggttatggcttgctgttgg
ggccctggaaagccagcaactacttttgtgatgttggattcgtcgggagaggttttggat
atcctgtatgctgggtctctcagccttcgtggacagaatgttaatgatgagcagcggaag
aagaatgatcagcagagactgttaaaattcatgatggaccaccaaccacatgttgtggtg
ctgggagctgtaaatctatcttgtacgcggcttaaggaggatatttatgagataattttc
aaaatggtggaggataatccaagagatgttggtcatgagatggataatttgaacataata
tatggagacgaaacccttccacatctctatgagaattcccgcatttcagtggaccagctc
cctgggcagtcaggtattgtgaggcgcgctgtggcactgggacgttatcttcaaaatcct
ttagcaatggtagcgacattgtgtggaccaggcagggagattttatcgtggaagctgagt
actttagatagttttcttacaccagatgagaagtatgggatggttgaacaggttatggtt
gatgtaactaaccaggtgggtgttgatcttaatttggctataagtcatgaatggttgttt
gcccctttgcaatttatttcggggctaggtcccagaaaggcagcatctcttcaaagatcc
ttggtaagacagcagacaatcttcactaggaaggatatcttgactgaacatcatcttggt
aaaaaggtatttgtgaatgcagttggcttcttgcgagtaaggcgtagtggatacactgct
aacagtaatacatatattgacttgttggatgatacaaggatccacccagaatcctatggt
cttgcacaggagttggccaaagatatttatcttaatgatatcggtgaagaaaataatgat
gatgatgaactgcttgaaatggcaatagagcatgttagagagaagccacatctggcgagg
ttacttgaagttccaaactacgccaaatccaaagatcgtcaggacaaagaggaaactctt
aacgatataaggttagagctgatgcaagggtttcaagattggcgtagacagtatgtggag
ccaagccaggatgaggagttctatatgatttctggcgagtctgaggagacactttccgag
ggaagaattgtgcaggcaacagttcgccgagttcaacctcagaaagctatctgtgctctc
gagtctggattgactggcattcttaccaaagaagattcttcagatgattggagagatgtc
aatgatttgactgaaaaaatgcgtgaaggtgatatcttaacttgcagaatcaagtcgatc
caaaaaaataggtaccaggttttccttagctgtaaagagaatgatatgagaaataatagg
tatcagaataatcagaacttggatccatactaccatgaggatcgcagtagtttacaggct
gaaaaggataaagctcgtaaagaaaaggagctcgcaaagaagcatttcaagccaaggatg
atagttcatcctcgattcaaaaatataacggcagatgaagcaatggagttcttgtcggac
aaggaaccgggtgaaagtatcgtacgtcccagctcacgcggaccatcttatttaacttta
actctcaaagtgtacgatggagtttatgctcacaaggatattgtggaaggtggaaaggaa
cataaggacataacaagcttgcttcgtatcgggaaaacactgaaaataggagaggatact
tttgaagatttagatgaggtaatggatcggtatgtcgatccattagtaactcatttgaag
gcaatgctgaattaccgcaagtttaggaagggatcaaaggcagaagttgatgaacttttg
agaattgagaaatctgagtaccctatgaggattgtctatagctttggtatttctcatgaa
caccctgggacattcattttgacttacatacggagttccaacccgcaccatgagtatgtt
ggtctgtacccgaaaggatttaaattccgcaagaggatgtttgaagatattgatcgcctt
gtggcatattttcaaagacatattgatgatccccatgactctgcaccatcaatacgatca
gttgcagcgatggtgcctatgcgcagccctgcaggtgggggctcaggatttggtggcagt
tggggtggttcatccaatgatagtggtcgaagaggtggtcagtctggggacagagattct
agaccaggtagaaatgactacagaaatcgaagcagtcaggataatccgagtggattgcct
cccaggccctatggtggtggtggtcgtgggcgtggccgaggacgtggtcggggaacatat
ggacgtggtagagaaaataacgataatgacgggcaagattcagattatggcactcaaaag
tggggttctaaggaaggtggaggaggatggggtgcagaagtccaaaattcacctgctaga
gacactttctctggtggttggagtggtggtggaagtggtgccggaggtggtagcggagac
ggaggtggttggggaggcaatggtggtggtgctggctgggggcaggataccggtggtcag
tccgatgattctggctggggtggcggtaaaaagggttcacaatccggtggcagcggaggg
tggtga
DBGET
integrated database retrieval system
