Nicotiana attenuata (coyote tobacco): 109234130
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Entry
109234130 CDS
T05870
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109234130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109234130
03041 Spliceosome [BR:
nau03041
]
109234130
03009 Ribosome biogenesis [BR:
nau03009
]
109234130
03016 Transfer RNA biogenesis [BR:
nau03016
]
109234130
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109234130
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
109234130
Spliceosome [BR:
nau03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109234130
Complex C
U4/U6.U5 tri-SnRNP related factors
109234130
Ribosome biogenesis [BR:
nau03009
]
Eukaryotic type
Pre-60S particles
Helicases
109234130
Transfer RNA biogenesis [BR:
nau03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
109234130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
109234130
NCBI-ProteinID:
XP_019255535
UniProt:
A0A1J6HWG2
LinkDB
All DBs
Position
11:11929207..11939180
Genome browser
AA seq
993 aa
AA seq
DB search
MGSFKRKSQEFSNNEGSIIPPPSKQMKQNGLVDEAVACVHDVSYPEGYIPSAASTLPQQD
SKPAKEFPFTLDPFQSEAINCLNNGESVMVSAHTSAGKTVVALYAIAMCLKNNQRVVYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYNGSDVIREVAWV
IFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKALNALVPANEGDKKRENGKWQKGL
VVGKSGEDSDIFKMVKMIIQRQYDPVICFSFSKRECEFLAMQMAKMDLNNDDEKVNIETI
FWSAMDILSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGFIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKL
EPPTVKSMLKGSADALNSAFHLSYNMLLNQIRCKDADPKNLLRDSFYQFQADRAIPDLEK
QAKILEEERDSIVIEEEDSLERYYSLLEQYKSLKKDVRNIVLSPKYCLPFLQPGRLVCIE
CTKIDDDVPTFSIKEEVTWGVIINFERVKGLSEDDANKKPEDANYTIDVLTRCIVQKDEV
GRKTIKIVPLKNAGEPAVVSLPLSQIDSLSSVRLVIPKDLLPSEVRENTLKKVSEVLNRF
SREGMPLLHPEDDMKVQSSTYRKASSKIEALESLFEEHKIATSPLIKEKLKVLHKKKELT
GKIRSIKRAMRTSKALAFKDELKARKRVLRRLGYIKSDDVLESKGNVVCLISSADELTLS
ELMYNGTFEKIKVEELVSLLSCFVWQEKLQDTQKPREELELLFAQLQDTARRVAKVQLES
KVQIDVENFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLIE
AAKAVGDEKHEAKFKEAVAKIKRDIVFAASLYL
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgggttcttttaagaggaagtcgcaagaattctcaaataatgagggtagtattatacct
cctccaagtaaacagatgaaacaaaatggtttagtggatgaagcagttgcatgtgtgcat
gatgtatcatacccagaaggctatataccctctgctgcttcaactttgcctcaacaagac
tcaaaacctgctaaagagttcccttttacccttgacccttttcaatccgaagctatcaat
tgccttaataatggcgaatccgtcatggtatcagcacacacgtcagctggaaagacagtt
gttgcattgtatgcaattgccatgtgtctgaagaataaccagcgagtagtatatacttca
ccaattaaggctcttagtaatcagaagtatagagaattcaaagaggagttttcagatgtg
ggtttgatgaccggagatgtcacgattgatccaaatgcttcttgcttggtaatgactaca
gagatctggcgtagtatgcagtacaacggatcagatgttataagggaggtggcttgggtt
atttttgatgaggtacattacatgcgtgacagagaaagaggtgtggtttgggaggaaagt
attgttatggccccgaaaaattctcgttttgtgttcctctcggccacggtgcccaatgct
aaagagtttgcggattgggttgcaaaggtccatcagcaaccatgtcacattgtttatacg
gactacagacccacaccacttcagcattatatatttccttctggtggtgatggattatac
ttggtggttgatgaaaaagggaagtttcgtgaggatagttttcagaaagctttaaatgct
ctagttccagccaatgaaggggataagaaaagagagaacggcaagtggcagaagggtctg
gttgttggcaaatctggtgaagatagtgacatattcaagatggttaaaatgattattcag
cggcaatatgatcctgtaatatgtttcagcttcagcaaaagagaatgtgaatttctagca
atgcagatggctaaaatggatcttaacaatgatgatgagaaggtgaatattgaaactatt
ttttggagtgctatggacattttatcggatgatgataaaaagctgccgcaggtttcaaat
atgcttccccttttgaaacgtggaattggtgtgcatcattctggtttgcttcctatattg
aaagaagtgattgaaatcctgttccaagaaggattcatcaagtgtttgtttgccacagag
accttcagtataggtctgaacatgcctgcaaaaactgttgtcttcacaaatgttcgtaaa
tttgatggagacaagtttaggtggatatccagtggtgagtatattcagatgagtggtcgt
gctggtcgtcgggggattgatgaacgtgggatctgcatccttatggttgacgagaagctt
gaacctcctacagtgaaatccatgctaaaaggaagtgctgatgcattaaacagtgccttc
catttaagctataacatgcttttaaatcaaatacggtgtaaagatgctgatcctaaaaat
cttctccgtgactcgttctatcaatttcaagcagatcgtgcaattcctgatctcgagaaa
caagcaaaaattcttgaagaggagagagactcaattgtgattgaagaagaagatagcctt
gagagatactatagtcttctagaacaatataagagcttaaagaaggatgtacgtaacatt
gttttatctccaaaatattgcttgccattcttgcagcctggtaggcttgtatgcattgag
tgtacgaagattgatgatgatgttccaaccttctccatcaaagaagaggtcacatgggga
gtaataattaattttgaaagggtgaaaggtctttctgaagatgatgcaaacaaaaaaccg
gaggatgcgaactatacgatagatgtacttacgagatgtatagtgcagaaggatgaggtt
ggtagaaagacaattaaaattgtcccgttgaagaatgccggggaaccagctgttgtttct
cttcctttgtcccagattgatagtttgagcagtgtccgtcttgtgataccaaaggatctt
ttgccttcggaagttcgagaaaatacactaaagaaggtttctgaagttctcaatagattt
tcaagagagggcatgcctctcttacacccggaagatgacatgaaggttcaaagtagcacg
tacaggaaggcttctagtaagatagaagccttggagagtctgtttgaagagcacaagata
gcaacgtctcccctcataaaagaaaagcttaaggttttgcataagaagaaagaacttact
ggcaaaatcagatcaattaagagagcaatgcgtacttcaaaagccttagcgttcaaagac
gaacttaaagcaaggaaaagagttctcaggagactcggatacatcaaaagtgatgatgtc
ctggagtctaaagggaacgttgtctgtttaatcagcagcgcagatgagttgaccttgagt
gaattgatgtataatgggaccttcgagaaaattaaagtggaggagcttgtctctcttctc
tcttgttttgtgtggcaagaaaagcttcaggatactcagaagcccagggaagagctagag
ttgctctttgcgcagttacaagatacagctcgaagggttgcaaaagttcagctcgagagc
aaggtccaaatagacgttgagaactttgtgagttcattccggcctgatatcatggaggct
gtctatgcgtgggctaaaggatctaagttttatgagataatggagattactcaggtgttt
gagggcagtttaatcagggctatcaggagactggaggaagttcttcagcagctaatagaa
gctgcaaaagccgtcggggatgaaaagcatgaggcaaaatttaaagaggctgtagccaag
atcaagagggacattgtctttgcggcatctctgtatttgtag
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