Nicotiana attenuata (coyote tobacco): 109234255
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Entry
109234255 CDS
T05870
Name
(RefSeq) uncharacterized protein LOC109234255 isoform X1
KO
K18734
protein SMG8
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109234255
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
109234255
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GFIT
Motif
Pfam:
Smg8_Smg9
Motif
Other DBs
NCBI-GeneID:
109234255
NCBI-ProteinID:
XP_019255705
UniProt:
A0A1J6HVM6
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Position
11:complement(24935558..24949997)
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AA seq
1221 aa
AA seq
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MDSSKLPNPQSMRVLIRPPIPPTHPQVPPLPPHPPPSDVPPPLTPQNGVVVVGFIGKRHD
DVAYLMNRIIDSNVFGSGGLDRPIFVEKPEFAVTEYMKSWFECRNISYYHGEEKGILYLQ
YSSTRCPVMMEDKNLESKLGFDSILEDREFGDLQAMLFMFSVCHVVVFIQDGSRFDTQAL
KRFRILQAAKQAMTPFVKSQSLSPSGSGSPFASPSRRGASGRSSNNPSPIKSRGIFNRNN
SAITLMSGLGSYTSLLPGQCTPVTLFAFLDDFADDCPSSSVEEPTDISSANQSSSAGTSA
RPSLAPKGSGSVVVLARPVSKSEGGFRKKLQSSLEAQIRFSIKKCRTLSGSETGHTGSRS
GGVSNSAPLFSLDASKAVALLDITSNKRGESLEFATGLVEDVLNGKATSDSLLLESHSQS
ANREDILSVKEFICRQADILRGRGGVVSNTNSGPASGVGMVAVAAAAAAASAASGKTFIS
PELPHLEKWLSSSQLILQAILSAKHAILDETEISKRKLQQRNSVSPPVEGNASKVSDPLE
IAMSYLERGRGVNTRFSTLWCQKALPVAKATYLNELPPCYPTSQHNAHLERALHAFNSMV
KGPAVRFYLQKLEDECTSIWTSGRQLCDAVSLTGKPCMHQRHDVETGGLCSSDDIKPHSS
GYVFLHACACGRSRLLRPDPFDFETANVTFNPSMDCDKLLPTIQLPPGSDTGGPIQPPSW
SLIRVGNARYYQPSKGLIQSGFSSTQKFLLRWTILLEKPKRENGLLSSNSQQANMNTFNS
NARDGPNKDAGIENAGALSVQNGYQIQKKSSAGNVKIDDKVNNFGKGVSNFNMRKAFSEV
VAGSTAANSGFPPLQSNKQIMSNPDRSIKQKSARDGEREKVNEISDEPVSEKIAVIPDIH
EVKNDSITVSNDVTKGNQIFQIGTHLDAMKINRIEKIRPITSSKHATVYIGFEHECPRGH
RFILTADHLNNLGSPYVLPVESVVSSSLENIDHKGVGPSRGGKNGGHGKGRRLANGFIPT
SSRKVRNLEKSNEGLDDGYSNIEGPAQLSWHPVHAASGEDLATGLQSLNLDDSGYATSLL
DRSLPIYMNCPHCMELKSKNDQADVRFAGTISQLQRIFLVTPHFPVILAANPVIQFEESC
LPPSMPDRKKKLQFCLGCQVILPPESFLSLRLPFVYGVQLENGNLHPLMPFEQQPQLTAW
ITKGTTLQIVSKDSNHEELFT
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggactcctcaaaattaccaaatcctcaatccatgcgggtcctaattcgacctccgatt
ccacctacccacccccaagttccaccccttcctccccacccacctccatcagacgtacca
cctccactcacccctcaaaacggtgtcgtcgtggttggctttatcggaaaacgccatgat
gacgtggcttatttgatgaaccggattatcgactctaatgtgtttggctcggggggttta
gataggccgatttttgttgaaaaaccggaatttgctgttactgagtacatgaagagttgg
tttgagtgtaggaacataagctattatcacggtgaggaaaaggggattttgtacttgcaa
tactcttcaactcgatgccctgtgatgatggaagacaaaaatttggagtctaaattggga
tttgattcaattttggaagaccgcgaatttggtgatctccaagctatgctctttatgttc
tctgtttgtcatgttgtagtttttattcaagacgggtcacgctttgacacccaggcactg
aagagatttcgcatcttgcaagcagctaaacaagcaatgactccatttgtgaagtcacaa
tctctgtcaccctctggatctggctcaccttttgcatctccatcacgtagaggtgcatct
ggaagatcatctaacaatccttctcctatcaaaagccgaggcattttcaaccgaaataat
tcagcaattactttgatgtcaggtttaggttcatatacctctttattacccgggcaatgt
actccagttacgctttttgcttttcttgacgattttgctgatgattgtcctagttctagt
gttgaggagccaactgatatttcctcagcgaatcaatcatctagtgctggtacctcggct
cggccaagcttggctccaaaaggttctggttctgtggttgtgcttgcacgtcctgtgagt
aaatctgaaggtgggttcaggaagaaattgcagtcttctctggaggcacagattcgtttc
tccattaaaaaatgccggacgctgtctggttctgaaactggtcatacgggttcaagaagt
gggggtgtgtcaaattctgcacctctgttttcccttgatgcatcaaaggctgttgcactt
ttagatataacatctaataagagaggtgaatcccttgaatttgccactggtcttgtggaa
gatgttctgaacgggaaagcaacctcagattctcttctgcttgaaagtcatagccagagt
gcaaatagagaagacatactttctgtcaaggagttcatctgcaggcaggctgacatatta
agaggaagagggggtgtggtttccaataccaacagtggtccagcttctggtgttggcatg
gttgctgttgctgctgcagcagcagctgcttctgctgcttccgggaagacatttatttct
cctgaacttccacatttggagaaatggttatcttctagtcagcttattctgcaagcaatc
ctttcagcaaaacatgccattttggatgagactgaaattagtaagagaaagctgcaacaa
agaaattccgtttcaccacctgttgaaggaaatgcctcaaaagtttcagatccacttgag
attgcaatgtcttatttggagagaggtagaggggtaaatactaggttttctactttatgg
tgccaaaaggcccttccagtagctaaggcgacatatctaaatgagttgcctccgtgctac
ccaacttcccaacataacgcccatttggagagggctctgcatgccttcaattcaatggta
aagggacctgctgtacggttttacttgcagaaactggaagatgagtgcacatccatctgg
acttctggcaggcaactatgtgatgctgttagtctcacgggaaaaccatgcatgcaccaa
aggcatgatgtagaaactggcggtttatgttcaagtgatgacattaagccacattccagt
gggtacgtcttcctacatgcatgtgcatgtggtcgttcaagactcctgcggccagatcct
tttgattttgaaacagctaatgttactttcaatccttcgatggattgtgacaagcttctt
cccacaattcagttacccccaggaagtgatacaggtgggcccattcagcccccttcttgg
agtttaattcgagttgggaatgcaagatactaccagccatctaaaggtttgatacagagt
ggcttcagttctacccagaaatttcttctaaggtggaccatccttcttgagaagccaaaa
cgtgagaatgggctactatcaagcaattcacaacaagcaaatatgaatacgtttaatagc
aatgccagggatgggcctaacaaagatgcaggcatagagaatgctggtgctttgagtgta
caaaatggatatcaaatccaaaagaagtcctctgcaggaaatgtcaaaatagatgataaa
gtaaataattttggtaaaggagtttccaactttaatatgagaaaagctttttctgaggtg
gtagctggttcaactgctgcaaattcaggatttcctcccctacaatcaaataaacaaatt
atgtcaaatccagataggagtattaagcaaaaaagtgcgagagatggggaaagagagaag
gttaatgagattagtgatgaaccagtatcggaaaaaattgctgtaattcctgatattcat
gaagttaagaatgatagtattactgtttctaacgatgttactaaaggtaatcaaattttc
cagataggtacacatttggatgcaatgaagatcaatagaattgagaagatcagaccaatt
acctcttctaagcacgcaacagtttacattggatttgagcatgagtgcccccgtgggcac
cgctttatattaactgcggaccatctcaacaatctaggttctccttatgtgttgcctgta
gaatctgttgtctcttcatctttagaaaatatcgatcataagggggtaggtccctctaga
gggggtaagaatggtggccatggcaaaggccgccgactggcaaatggattcattcctact
tcctctaggaaggttcggaatctggaaaagtcaaatgaggggttagatgacggatattca
aatatagaagggccagctcaactttcctggcatccagtacatgctgcatcaggggaagat
cttgcaactggtcttcaatctctaaatctcgatgactctggctatgctacctccttgtta
gatagaagtttgcccatatacatgaactgcccacattgtatggaattgaagagtaagaat
gatcaagcagatgtgagatttgcaggaaccatttcacagctccagaggatctttctggtt
acacctcacttcccagtcattttagcagcaaacccagtcatacagtttgaggagtcatgt
ctccctccatctatgccagaccgtaaaaagaagttgcagttctgtcttggatgtcaagta
attttacccccagagagttttctgtcacttcgactaccttttgtttatggtgtacagctg
gaaaatggaaacctccatcctcttatgccttttgaacagcagcctcaactcactgcctgg
ataacgaaaggcacaacattgcagattgtatccaaggacagcaatcatgaggaactattt
acatag
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