Nicotiana attenuata (coyote tobacco): 109234340
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Entry
109234340 CDS
T05870
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A isoform X1
KO
K12856
pre-mRNA-processing factor 8
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109234340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109234340
Spliceosome [BR:
nau03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
109234340
Complex C
U5 SnRNP specific factors
109234340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
109234340
NCBI-ProteinID:
XP_019255835
LinkDB
All DBs
Position
11:34410218..34427716
Genome browser
AA seq
2430 aa
AA seq
DB search
MEFRFGEVPPAPGTSSGPAMMPPGTSGSSGGPAPPLPPPSYTVLPPLMPPPPGTNSGPAM
MPPGTSGSSGGPAPPLPPPSYTVLPTEAQLEEKARKWMQLNSKRYSDKRKFGFVETQKED
MPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRDVKILY
HITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NLLDVDPLEPIQLELDEEEDSAVYNWFYDHKPLVKTKLINGPSYRRWHLSLPIMATLHRL
AGQLLSDLTDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDEDWNEFNDINK
LIIRSPLRTEYRIAFPHLYNNRPRKVKLGIYHTPMIMYIKTEDPDLPAFYYDPLIHPIVT
KDRREKKVHEDDDDDDFTLPECVEPLLNETPIYTDTTAAGISLLFAPRPFNMRSGRTRRA
EDIPLVSDWFKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKKKHLFRSLQATKF
FQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFG
NAFHLCREILRLTKLVVDANVQFRLGNVDAFQLADGLQYIFSHVGQLTGMYRYKYRLMRQ
IRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFE
GRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPGDNLLLLIVRLSSDAFVSLHYSN
QIFLLILCLFTLEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSK
ADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEA
VAIYTTTVHWLESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGL
IEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYL
WYEGDKRHLFPNWIKPADSEPPPLLVYKWCQGINNLQGVWDTSEGQCVVMLQTKFEKFFE
KIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGL
VLDLLLLGLTRASEIAGPPQMPNEFITFSDTRVETRHPIRLYSRYIDKVHILFRFTHEEA
RDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSIT
TLEWENSFVSVYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERT
AVAFLRVDDEHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELL
DLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQ
TDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTL
EDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLW
NLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSG
LNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKI
HESVVMDLCQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLV
AESKDVFDQKASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGL
DLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSS
QNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTS
VWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIK
GSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHV
NNEKAKMLLKPDKSVVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQS
EIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQA
AFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIA
GYLYGVSPPDNPQVKEIRCIAMPPQWGTHQQVHLPSGLPEHDFLNDLEPLGWMHTQPNEL
PQLSPQDVTSHARILENNKHWDGEKCIILTCSFTPGSCSLTAYKLTPTGYEWGRANKDTG
SNPHGYLPTHYEKVQMLLSDRFLGFYMIPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYY
NEDHRPTHFLEFSNMEEGDTAEADREDTFT
NT seq
7293 nt
NT seq
+upstream
nt +downstream
nt
atggagtttcgatttggtgaggtaccgccggctccaggtacaagctcaggaccggcgatg
atgcctcctggtacaagcggtagtagcggaggaccggctccgcctctgccaccgccttct
tatactgttttgccgcccttgatgccgccgcctccaggtacaaactcaggaccagcaatg
atgcctcctggtacaagcggtagtagcggaggaccggctccgcctctgccaccgccctct
tatactgttttgccgacggaggctcagcttgaagagaaagctaggaaatggatgcagctt
aactctaagcggtatagtgataaacgcaaatttggatttgtggagacgcaaaaggaagat
atgcctccggagcatgttcgcaagattattagggaccatggggatatgtcatcaaaaaaa
tatcgtcatgataaacgtgtgtatctcggagctcttaaatttgtccctcatgctgtttac
aaacttcttgagaacatgcctatgccgtgggagcaggttcgagatgtgaaaatcctgtac
catattactggtgctattacatttgttaatgagataccatgggttgttgaacctatatat
ctggctcagtggggcactatgtggatcatgatgaggagggagaagagagaccggcggcat
ttcaagagaatgcgttttcctccttttgacgatgaggagcctccgttagattatgctgat
aatcttttggatgttgatccgttagagcctatccagttggagttggatgaagaagaagat
tcagctgtttataactggttttatgaccataagccacttgtgaaaacaaagcttattaac
ggtcctagttaccgcaggtggcatttgtccctccctataatggctacacttcaccggctg
gctggacagctgctttcagatcttactgatcgcaattacttctacttatttgatatggag
tcctttttcactgctaaagcattgaatatgtgcatacctggtgggcccaagtttgaacct
ttatatcgtgacatggagaaaggagatgaagactggaatgagtttaatgatatcaacaaa
ttgatcatcaggtcaccgctgaggacagagtacagaattgccttccctcacctctataac
aacagaccaagaaaggtgaagcttggtatatatcacactccgatgatcatgtacataaaa
acagaggatccagatctacctgctttctattatgatccgcttatacatcccatagtcacc
aaggaccggcgagagaagaaagttcatgaggatgacgatgatgatgactttaccttgcct
gagtgtgttgagccattgctgaatgagactccaatctatactgatactactgctgctggt
atttccctgttgtttgccccacgcccatttaacatgagatctggtcggacaagacgtgct
gaagatataccccttgtgtcagattggtttaaggagcattgtcctccatcatatcctgtc
aaggtgcgtgtcagttatcagaagttattgaaatgttttgtgttgaatgagctgcatcac
agacctcccaaggcccagaagaagaagcatctcttccgctcacttcaagccacaaaattt
ttccaaaccacagaacttgattgggctgaagctggtctccaagtttgcaagcagggatac
aatatgctgaatctcttgatccataggaaaaacctgaattatcttcaccttgattacaat
tttaatttgaagcctgttaagacgctaactacaaaggaacgtaagaaatcccggtttggt
aatgctttccacctttgtcgtgaaattctgcgtttgacaaagttagttgttgatgccaat
gttcagttccgtctgggaaatgttgatgcatttcagctggcagatggcttgcaatacatt
ttttcacatgtgggtcagttgacgggtatgtaccgttacaagtacaggcttatgaggcag
attcgaatgtgtaaggatttgaaacatttgatctattatagattcaatactgggccagtt
ggaaaaggtcctggttgtggtttctgggcacctatgtggagggtgtggttattcttcctt
cgtggtatagtgccacttttggaacgatggttaggaaatttactggcgaggcaatttgag
ggtcgccattcaaagggggtggccaaaactgtcacaaagcaacgtgttgaaagtcacttt
gacttggagctccgtgctgcagtaatgcatgatgtccttgatgctatgccaggtgataat
cttctattattgattgtccgtctttcttcggatgctttcgtttctttacattactcgaac
caaatctttttgctaatattgtgcctctttactttagagggtatcaagcaaaataaagcg
agaaccattttgcagcatctaagtgaagcatggcgttgttggaaggcaaatattccttgg
aaggtcccaggtttgcctgttcctattgagaacatgattctccgctatgtcaaatcaaaa
gctgattggtggacaaatgttgctcactacaaccgtgaacgtataagaagaggagcaact
gttgacaagactgtgtgtcgtaaaaaccttggaagattgactcgcctttggctgaaggct
gaacaggagcggcaacataactacttgaaagacggcccatatgttactccagaagaagca
gtagctatttatactaccactgtgcattggttggagtcgaggaagttttctcctattcca
ttccctccattgtcatacaagcatgatacgaagctacttatccttgctcttgagagactg
aaagaatcttacagtgtggctgtgaggttaaaccagcagcaaagagaagagttgggcctc
attgagcaagcttatgataatccgcatgaggcattatcaaggataaagcgtcacctactt
actcagcgtgccttcaaagaagttggcatcgagttcatggacttgtacagttacctgatt
cctgtttatgagatcgaaccacttgagaagattactgatgcgtacctggaccagtaccta
tggtatgaaggtgataagcgccatctcttcccaaattggattaagcctgctgattcagag
ccaccaccactattagtatataaatggtgtcaaggcataaacaatttgcaaggagtatgg
gataccagtgaaggacagtgtgtcgtgatgctgcagacaaagtttgagaaattctttgaa
aagattgacctgaccatgttgaacaggcttctgcgtttggtgctggaccacaatattgct
gattatgttactgcaaaaaacaatgttgtgctgtcttacaaagatatgagccacacaaac
tcatacgggctgatacgtggtcttcaatttgcttcgtttgttgtacagtactatgggctt
gtgttggatcttttgctcctaggtttaactcgagctagtgaaattgctggtccaccacag
atgcctaatgaattcataacctttagtgatactagagtggaaacgaggcatcctatccgg
ttgtactctcgctacattgacaaggtgcatatattatttcgcttcactcatgaagaggct
cgcgaccttatccaaagatatcttactgagcatcctgatcccaacaatgaaaacatggtt
ggttataacaacaagaaatgctggccaagggacgcaagaatgaggctcatgaagcatgat
gttaatcttgggagaagtgtcttctgggacatgaagaatcggctgcctagaagtattact
acattggagtgggaaaacagctttgtctctgtttatagcaaagataacccaaacttgctc
ttcagcatgtgtggatttgaagttcggatactgcctaagataagaatgacccaagaggca
ttcagcaatacaagagatggagtctggaatctacaaaatgagcagactaaggaacgcaca
gctgttgccttcttgcgtgtagatgatgagcacatgaaggtgtttgagaatcgtgttagg
cagatcctcatgtcctctggttctacaacattcacaaagattgttaacaaatggaacact
gctcttattggcctcatgacatatttccgtgaagcaacagtgcatacccaagaattactg
gacctgctggtcaaatgtgaaaacaagatacaaactcgtataaagattggtttgaactca
aaaatgcccagtaggtttcctcctgttattttctacacaccaaaggaaattggagggctg
ggaatgttgtcaatgggtcacatattgatcccgcagagtgatcttagatatagtcagcaa
acagatgttggtgtgacacatttcagaagtggaatgagccacgaagaggaccaattgatt
ccaaatctttatcgatacatacagccgtgggagagtgagttcattgactctcagagagtt
tgggccgaatatgctttgaaaaggcaggaagcccaggcacagaataggcgtttgactctt
gaagatctggaagattcatgggatcgtggaatacctcgaatcaatacattgttccagaag
gatcgccacaccctagcatatgacaaaggatggagagtgagaacagactttaaacagtac
caagttcttaagcagaatccattctggtggacacaccagaggcatgatggaaagctatgg
aacctgaataactatcgtactgatgtgatacaagctcttggaggagttgaaggaattctt
gagcacacattattcaaaggaacatatttccctacttgggagggtcttttctgggagaaa
gcttcaggttttgaggaatctatgaagtacaagaaactgactaatgctcaacgatctggg
cttaatcaaattcctaatcgtaggtttactctgtggtggtcgccaacaataaatagggcc
aatgtctatgttggtttccaagtacagctggacctgactgggatatttatgcatggaaag
attccaactctgaagatatctctgatacagatcttccgtgcacatttgtggcagaagatc
catgagagtgttgtcatggatctttgccaagttttggatcaagagttggatgcgttggaa
attgagactgtacagaaggaaacaattcatccaagaaagagttacaaaatgaatagctcg
tgcgctgacatcctcctttttgctgcacatagatggccaatgtcaaaacctagtcttgtg
gccgaatcgaaggatgtgtttgaccagaaggctagtaacaaatactggatagatgtgcag
cttcgatggggtgactatgattctcatgatattgagcgttatacacgagcaaagttcatg
gattacacaacggacaacatgtctatttatccatctcctactggtgtaatgattggactt
gaccttgcttacaacttgcattccgcctttggtaactggttccctggttcaaaaccattg
cttgcccaagccatgaacaagattatgaagtcaaatcctgcactctatgttctgagggaa
cgcataaggaaagggttgcaattgtattcttcagagcccacagaaccatacttatcatct
cagaattatggagagattttcagcaatcaaattatatggtttgtcgatgacacaaatgtg
taccgagtgaccatccacaagacctttgagggaaatctgacgacaaagcccataaatggt
gcaattttcattttcaatcctaggacaggacaactgtttttgaaggtcattcacacaagt
gtgtgggcagggcaaaagcgtcttggccagctggccaagtggaaaacagccgaagaagtg
gctgcgcttgtaaggtctttgccagttgaagaacaacctaagcaaattattgtgactagg
aaaggaatgcttgatcctctggaggtccacttgctcgattttccgaatattgttatcaaa
ggaagtgagctgcagttaccgttccaggcctgtttgaagatagaaaaattcggtgatctt
atactgaaggctacggagccacaaatggttctgttcaacatatatgatgattggttgaag
agcatctcgtcctatacagcattctccaggctcatcctcatcctgcgtgcacttcatgtg
aacaatgaaaaggctaagatgctactcaagcctgacaagtcggtcgttactgagcctcac
cacatctggccttcacttacagatgaccagtggatgaaggtcgaagtagcgcttagagat
ctcattctctcagactatgcaaaaaagaacaatgtcaacacatcagcattgacacagtct
gagatccgtgatattatacttggagctgagattactcctccatcccagcagcgacaacag
atagctgagattgagaaacaggccaaggaagcaagtcaactgacagcggttaccacaaag
accactaatgtccacggtgacgagttgattgttactaccacaagtccctatgagcaagct
gcctttggctctaaaacagattggcgtgtgagagcaatttctgcaacaaatctctatctc
cgtgtgaaccacatatatgtaaattcagaggacataaaggagactggatatacgtacatc
atgccaaagaatattctgaagaaattcatttgcattgctgatctgcggacacaaattgct
ggttacttatatggtgtaagtccaccagataatcctcaggtgaaggaaatccggtgtatt
gcaatgcctccacagtgggggacacatcagcaggtgcatctaccttccggtcttccggag
catgattttctcaatgacttggagcctttgggatggatgcacacacaaccaaatgaactt
cctcagttgtctccgcaggatgttacttcacatgctcggatcctggagaacaacaaacac
tgggatggagagaagtgtattatattgacatgcagtttcacaccagggtcttgttcgtta
actgcatataagctaacgccaacagggtatgaatggggacgtgctaacaaagatacagga
agcaaccctcatggttacctgccgactcattatgagaaggtccagatgctgttgagtgac
cgattccttggcttttacatgatacctgataatggtccatggaattacaacttcatggga
gtgaagcacactgttagcatgaagtacggggtgaagttaggtacacctcgggagtactac
aatgaggatcaccgaccaacacatttcctggaattcagcaatatggaggaaggcgacact
gctgaggcagatcgggaagatacatttacataa
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integrated database retrieval system
