Nicotiana attenuata (coyote tobacco): 109234476
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Entry
109234476 CDS
T05870
Name
(RefSeq) dicer-like protein 4 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nau03036
]
109234476
Chromosome and associated proteins [BR:
nau03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
109234476
microRNA pathway
RISC loading complex
109234476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
DND1_DSRM
dsrm
PAZ
Cas3-like_C_2
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
109234476
NCBI-ProteinID:
XP_019256033
LinkDB
All DBs
Position
11:complement(48484598..48548745)
Genome browser
AA seq
1627 aa
AA seq
DB search
MEAGDFENGTESPPSAATSPITEQLSALSLSGDIDSPVSVQKPEKDPRKIARKYQMDLCK
KALEENVVVYLGTGCGKTHIAVLLIYEMGQLIRKPQKSICVFLAPTVALVQQQAKVIEDS
IDFKVGTYCGKSKHLKSHEDWEKEMEQYEVLVMTPQILLHNLSHCYIRIEFIALLIFDEC
HYAQVESDHPYAEIMKIFYKPDVVKLPRIFGMTASPISGKGATVEGLETLLRSKVYSVED
KDELEQFVASPKVNVYYYGPGTACLTKAYSQKLEEIKHQCVMVLHKKAVDHSTLRNTKKM
LKRLHGHLIFSLENLGVFGALQASCILLKGDHYERHQMVEADVNASDDSLCDRYLSQVAT
VFTSGCAKDGMNPDLTRVEVLKEPYFSKKLLRLIGILSNFGVQPDMKCIIFVNRIVTARS
LSYMLQHLKVLSSWKCGFLVGVHSGLKSMSRKNTNIILNKFRSGELNLLVATKVGEEGLD
IQTCCLVIRFDLPETVASFIQSRGRARMPKSEYAFLVDSDNQRELNLIEHFSRNEARMND
EISSRKSCTAVIDFQENIYKVDMTGATISSASSISLLHHYCSKLPRDEFFCPKPQFFYFD
DIDGTICKLVLPSNAPMHQIVSAPQSSIEAAKKDACLRACKSLHELGALTDYLLPDQADE
DLIHVFSDSESSDGEDAREELHEMIVPAAFKESWTETESPVCLNSYYINFSPCPIDRVYK
KFGLFLKAPLPQEAERMKLDLNLARGRSVETELIPSGATNFENNEQVQLAEKFQRMFLKI
ILDRSEFISEFVSLEKEDYVDSASKSYLLLPVNLCGHNKISVDWELVRRCLSSPIFGTKV
YAGNSEISKFDEQLQLANGSKSVHDVANSLVYVPCKETFFFISDVVKESNAYSIYKDSKN
HVEHYYDTFGIRLSYPEQPLIKAKQLFCLDNLLRKKGYSELRDKEEHFVELPAEICQLKI
IGFSKDIGSSLSLLPSIMHRLESLLVAIELKGCLSASFPEGREVTIDHVLEALTTEKCNE
PFSLERLEVLGDAFLKFAVGRHVFLTYNAFDEGQLTRRRSNIVNNSYLYTIAVRNNLQAF
IRDQSFDPYHFYAVGRPCPVICNKQTEKSIHGQCGSVTDGAKTEVRCSKCHQWLRKKTIA
DIVEALVGAFVVDSGFKAAIAFLKWIGIYTDFEESQVKSICAASKVFMPLADEIDIQAIE
NLLGYTFVHKGLLIQAFIHPSYNNHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQ
LTDLRSVSVNNTTFAVVAVHQSFHSHILCDSSGLRESITRYVNFIGRPDSMKRLSEEPSC
PKALGDLVESCMGAILLDTGFDLNRAWRIMLSFLKPVMSFTRLQLNPKRELHELCQSYGW
HLKFLASKKDSKYLVEAKVNGENVSEAASALNINKKAAARMAAQQVHSSLKAQGYRRKSK
SLEQVVKTAKKMEAKLIGYDEIPCVLTAKCNDVEKNEASESDRDLKVFPISEELARNCNF
KLKPARKLAPEAAVQCNSEQTIMPNGSNSDSKATGGAINGSAKSILHEVCAANCWKPPRF
ECCKETGPSHLKEFTFRVVVEIEETSRVIESCGAPRAKKKDAAEDAAEGALWFLKHEGYM
FGIEFVY
NT seq
4884 nt
NT seq
+upstream
nt +downstream
nt
atggaagccggcgacttcgagaacggcactgagagtccaccaagtgctgcaacttcaccg
atcactgagcagctttctgctctgtctctcagtggcgacatagattcccctgtttcagtt
cagaaaccagagaaggaccccagaaaaattgctagaaagtatcagatggatctttgtaaa
aaagcattagaggagaatgttgttgtatatctgggaacgggctgtgggaaaactcatata
gccgtcttgcttatctatgagatgggacagctgataaggaaaccccagaagagcatttgc
gtgtttcttgctcccactgtggcgttggtgcaacagcaagccaaggtcatagaagactct
attgacttcaaagttgggacatactgcgggaaatccaagcatttgaagagccacgaagac
tgggaaaaagaaatggaacagtatgaggtccttgttatgacccctcaaatactattacat
aatctttcccactgctatatcaggattgaatttattgctcttctgatctttgatgagtgc
cactatgcacaagttgagagtgatcatccttatgctgagattatgaagatattttacaaa
cctgatgtagtaaaactgccccgtatatttggcatgactgcatctccaatatcaggaaaa
ggtgctactgttgaaggccttgagaccttacttcgctctaaggtgtattctgttgaagac
aaggatgaactggaacagtttgttgcatcacctaaggtgaatgtatactactatggtcct
ggcaccgcgtgtcttactaaagcttactctcagaagcttgaagagataaaacaccagtgt
gtgatggtgcttcacaagaaagcagttgatcatagcactctcaggaacacaaaaaagatg
ctcaagagactgcatggacatctaattttttctctggaaaacctaggtgtctttggggca
ttacaggctagttgcatcctcttaaagggggatcactatgagcgccatcaaatggtggaa
gctgatgttaatgctagtgatgactctttgtgtgacagatatctgagtcaggtcgccaca
gtgtttacttctggttgtgctaaagatggtatgaatcctgatttgacacgtgtggaagtt
ctgaaggagccttatttctccaaaaagcttttacgtctaattggaatcctttccaacttc
ggggtacaaccagatatgaagtgcataattttcgtcaataggatcgtgactgcgagatct
ctttcttatatgcttcagcatctgaaagttttatcttcttggaaatgcgggtttcttgta
ggagtgcactcgggattgaagagtatgtcacgaaaaaatacaaatatcattctcaataag
ttccgttctggtgagctcaacttattggttgccaccaaagttggcgaggaaggacttgat
atccagacatgctgcctcgttatacgatttgatcttcctgaaactgttgccagttttata
cagtctagagggcgtgcccgcatgccaaagtctgaatatgcatttttggttgatagtgat
aaccaaagggagcttaatttgattgagcatttttcaagaaatgaagctcggatgaatgat
gagatttcttccaggaaatcttgcacggcagttatagattttcaagaaaatatatacaaa
gtagatatgactggtgcaaccatcagttctgcatcaagcatttcgttgcttcaccattat
tgttccaagcttccacgtgacgagtttttctgccccaagccgcagttcttctactttgat
gacatagatggaactatttgcaaattagttttgccttcaaacgctccaatgcatcaaatc
gtgagtgctcctcaatcttctatagaagcagctaagaaagatgcctgtttaagagcctgc
aagagcttgcatgaacttggagcactcactgattatcttttgccggatcaagcagatgaa
gacctgattcatgttttttctgactcagaaagctcagatggcgaagacgcacgagaagag
ctccatgagatgattgttcccgctgcctttaaagaatcatggactgagacagagagtcct
gtttgccttaactcgtactacatcaacttttcaccttgtccaattgatagggtttataaa
aagtttggcctatttctgaaagcacctcttcctcaagaggctgagagaatgaaacttgat
ctcaacttggctcgaggtagatctgtggagacagagcttattccatcaggagctactaat
tttgagaacaatgagcaggtacaactagcagagaagttccagagaatgttcctcaagatc
attcttgaccgctctgagttcatttcagaattcgtatctttggaaaaagaagattatgtt
gactcagcttcaaaatcttacctacttcttcccgtcaatttatgtggacacaataaaatt
tccgtggactgggagcttgtcagaagatgcttgtcatcaccaatttttgggactaaagta
tatgcaggcaatagtgagatatccaaatttgatgagcagttgcaacttgccaatggttcc
aaaagcgtacatgatgttgccaatagtttggtatatgttccatgcaaggagacatttttc
ttcatatctgatgttgtcaaagaaagcaatgcatacagcatatataaagattcaaaaaac
catgtcgaacactattacgatacttttggtatccgtctttcgtaccctgagcaaccactt
ataaaagcaaaacaactcttctgtttggacaacttactacgaaagaaaggctattcagag
ttgcgtgataaagaggagcactttgttgaactacctgctgaaatttgccagctcaagata
attgggttttccaaagatattgggagctcattatctctgttgccatcgatcatgcatcgt
cttgaaagcttacttgtcgctatcgaactaaagggctgcctatctgcttctttccctgag
ggaagggaagtaacaatagatcatgttcttgaagcacttactacagagaaatgcaatgaa
cctttttctcttgaaaggcttgaagtgcttggtgatgcatttctcaagtttgcagttggg
aggcatgtctttcttacatacaatgcctttgacgaaggacagttaactagaaggcgctca
aacattgtgaacaattcctatctgtacactatagcagtcagaaacaatttacaggcgttt
attcgtgatcaatcatttgatccctaccacttctatgcagtaggccgtccgtgccctgta
atctgtaacaaacaaacagaaaaaagcatacacggtcaatgtggtagtgtaacagatggt
gcaaagactgaagttaggtgtagcaaatgtcatcagtggttgcgtaagaaaacaattgct
gatatagttgaagcccttgttggcgcttttgtagttgacagtggcttcaaagcagcaatt
gcatttcttaaatggattggtatctatacagattttgaagaatcacaagtaaagagtatt
tgcgctgcaagcaaagtctttatgccacttgctgatgaaatagatattcaggccattgaa
aatttattaggttatacattcgtccataagggtttgctcattcaggccttcatccatcca
tcttataacaaccacggaggaggttgctatcagagactggagtttcttggagatgctgtc
ctcgattatttgatcacatcctatctatactctgtgtacccaaaactgaagcctggccag
ttgactgatctgagatcagtttctgtaaacaacaccaccttcgcagttgttgcagtacat
caaagcttccacagccatatactctgtgattctagtggcctccgtgagtcaattactaga
tatgtcaatttcattggaagaccagattctatgaaaaggttgtctgaagagccatcttgt
ccaaaggcccttggcgacctggtggagtcttgtatgggtgcaatcctgcttgacacaggg
tttgacttgaaccgtgcttggcgtataatgctctccttcttaaagcccgtcatgagcttt
accaggttgcagcttaatccaaaaagagaactccatgaactttgccagtcttatggctgg
catctaaagttcctggcttcaaaaaaagatagcaaatatctagttgaggccaaggtgaat
ggggagaatgtttctgaagcggcttctgctctcaatatcaataaaaaagctgccgcaaga
atggctgcccagcaagtacattcaagcttgaaggctcaaggctataggcgcaagtctaaa
tcactggagcaagtggtaaaaacagctaaaaagatggaagctaaactgataggatatgat
gaaataccctgtgttcttactgctaagtgcaatgatgtggagaagaacgaagcatctgaa
agtgatcgtgacttgaaagtattccctattagtgaggaacttgcaagaaattgcaatttc
aagttaaagcctgcgagaaagttggccccagaggcagctgtacaatgcaactctgagcag
accatcatgcctaatggctctaattcagattcaaaagctacaggtggtgcaataaatgga
tcggcaaagtcaattttgcatgaagtttgtgctgccaactgctggaaacctcctagattt
gaatgttgcaaggagacagggccaagccacttgaaagagtttacttttcgggtggtggtg
gaaattgaagaaacatcaagagttatagagtcttgtggagctcctcgggcgaaaaagaaa
gatgcagctgaggatgcagcggaaggggcactttggttcttgaagcacgaaggatacatg
ttcggtatagaatttgtatattaa
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