Nicotiana attenuata (coyote tobacco): 109235292
Help
Entry
109235292 CDS
T05870
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau00040
Pentose and glucuronate interconversions
nau01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
109235292
Enzymes [BR:
nau01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
109235292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
109235292
NCBI-ProteinID:
XP_019256896
UniProt:
A0A1J6IDI4
LinkDB
All DBs
Position
12:complement(11290613..11293568)
Genome browser
AA seq
445 aa
AA seq
DB search
MASFSCNSVIFLFSLLFIASLIPNLHANIAEFDPYLEKKAEEALKSSLAAYNENPEELTD
TFNKEVGETIFNGTRRHLKEEDKDDKDDNDGCKAYNPIDKCWRCDKNWANNRKALADCAR
GFGHGTTGGKDGKFYVVTDPSDDNVEEPRPGTLRHAVIQEEPLWIIFEKSMIIRLQQELM
INNDKTIDGRGVSVHVAYGAGLTIQFVHNVIVHNIRVHHILSTSGGMIRDSIDHIGLRTV
SDGDAISIFGANRIWIDHCTLTKGADGLVDAIMASTAITISNCKFNHHNDVMLLGANDAF
PQDKIMQVTVAFNRFGKGCIQRMPRCRWGFFHVVNNDYAKWEMYAIGGTANPTIISQGNR
FKASNNPNTKEVTNRNGAPESLWRNWQWRSEGDLFLNGAYFRESGPDIKHTPFTEDTSIK
FEPAKFVGRLTRKAGVIKCKIGKAC
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcctcatttagttgtaattcagttatttttctcttttcccttttatttattgcttct
ttaatcccaaacttgcatgccaatattgctgaatttgatccttatttggaaaagaaagct
gaagaagccctcaagtcctctcttgctgcttataatgaaaatcctgaagaactcactgat
actttcaacaaagaagttggagaaacaatttttaatggcacaaggaggcatctgaaggaa
gaagataaagatgataaggatgacaatgatggttgcaaggcctacaatccaattgacaaa
tgttggaggtgtgacaaaaactgggctaataacaggaaggcattagcagattgtgctagg
ggatttggccatggcacaactggtggtaaagacggtaaattctacgttgtcaccgatccc
tcggatgataatgtggaagagccaaggccaggaacccttcgccacgctgtcatccaagaa
gagccgttgtggattatcttcgagaagtcgatgataatcaggttgcagcaagaactgatg
atcaacaatgataagacaattgatggcaggggagtttccgttcatgttgcatatggagca
ggattaaccatacaatttgtgcacaatgtgattgtccacaacattagagttcatcacatt
ctttctacctcaggtggtatgatcagagattctattgaccatattggtcttaggacagtg
agtgatggtgatgctatttccatctttggtgccaaccgtatctggatcgatcattgtact
ttaaccaagggtgctgatggcctcgtcgatgcaatcatggcttccactgctatcaccatt
tctaactgcaaattcaatcatcataacgacgtgatgcttttgggagcaaatgatgccttt
cctcaagataaaatcatgcaagttacagttgcattcaatcggttcggaaagggatgtatt
cagaggatgccaaggtgcaggtggggattcttccatgttgtcaacaacgactatgctaaa
tgggaaatgtatgcaattggtggcactgctaatcccaccattattagccagggtaaccga
ttcaaggcttccaacaatccaaacactaaagaggtgacaaaccggaatggcgccccagaa
tctctgtggagaaactggcaatggagatctgagggtgatttgttcttgaacggagcctac
tttagggagtccggaccagatatcaagcatactccattcacagaagataccagcatcaag
tttgagcctgctaaatttgtcggcagactcactcgcaaagctggtgtaatcaagtgcaag
attggaaaagcatgctag
DBGET
integrated database retrieval system
