Nicotiana attenuata (coyote tobacco): 109235489
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Entry
109235489 CDS
T05870
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
109235489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nau04131
]
109235489
Membrane trafficking [BR:
nau04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
109235489
Hops complex
109235489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_Vps41
zf-RING_11
zf_RING_Vps8
RPN1_RPN2_N
zf-RING_UBOX
Nup54_57_C
zf-rbx1
zf_RING_Vps8_fungal
zf-C3HC4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
109235489
NCBI-ProteinID:
XP_019257166
UniProt:
A0A1J6HT56
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All DBs
Position
12:complement(28176429..28232500)
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AA seq
987 aa
AA seq
DB search
MERRHQVFSVDLLERYATKGRGVITCMATGNDVIVLGTSKGWVIRHDFGVGDSYDIDLSV
GRPGEQSVHKVFVDPGGSHCIATVIGSSGADTYYTHAKWTKPRILSKLKGLVVNAVAWNR
QHITEASTREIIMGTDDGQLYEMAVDVKDKMEKYVKLLFELKELPEAFTGLQMETASVHN
GTRFYVMAVTPTRLYSFTGIGSLEAVFASYVDRTVHFMELPGEIPNSELHFFIKQRRAVH
FAWLSGAGIYHGDLKFGVQHSSPNGDENFVENKALLDYSKFSEGVEGVKPSSLAVSEFHF
LLLIGNKVKVVNRISEQIVEELYFDQTPDAVSRGIFGLCSDASAGLFYAYDQNSIFQVSV
NDEGRDMWKVYLDLKEYAAALANCRDALQRDQVYLVQAEAAFAAKEFLRAASFYAKINYV
LSFEEISLKFISIGEQDALRTFLLRKLDNLSKDEKCQITMISTWATELYLDKINRLLLED
DSALDSNNTEYQSLIKEFRAFLSDCKDVLDEATTMKLLESYGRVDELVFFASLKEQYEIV
LHHYIQQGEAKKALQVLQKPNVSTELQYKFAPDLIMLDAYETVESWMTTKSLNPRKLIPA
MMRYSSEPHAKNETHEVIKYLEYCVHRLQNEDPGVHNLLLSLYAKKEDESALLRFLECKV
GKGQPGGPEFFYDPKYALRLCLKEKRMRACVHIYSMMSMHEEAVALALQVDPELAMAEAD
KVEDDEDLRKKLWLMIAKHVIEQEKGTKRENIRKAIAFLKETDGLLKIEDILPFFPDFAL
IDDFKEAICSSLEDYNEQIEKLKQEMNDATRGADNIRNDISALAQRYTVIDWDEECGVCR
RKILNVGGDYRMTRGYMAVGPMAPFYVFPCGHAFHAQCLIAHVTRCTNQAQAEYILDLQK
QLTLLGAESKNVSNGGLSEEPLVSVTPMHKIRSQLDDAVASDCPFCGDLMIQEISLPFIL
PEEAEESESWEIKPHNHPSQRSLSLAV
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaagacatcaggttttctccgtagatcttcttgaaagatatgccacaaaaggc
cgtggagtcattacatgcatggcgactggcaatgatgtcatcgttctgggaactagcaaa
ggctgggtaatcagacatgactttggagtgggcgattcttatgatatagatctttctgtt
ggcaggcctggggaacaatctgttcataaggtttttgttgaccctggagggagtcactgt
attgccactgttattggcagtagtggtgccgatacatattatactcatgctaaatggaca
aagcctcgaattttaagcaaattaaaaggtcttgttgtcaatgctgttgcctggaataga
caacatataacagaagcttcaactagagaaatcattatgggtacggacgatggtcaactt
tatgagatggctgtagatgtaaaggataaaatggagaagtacgtaaagttactgtttgaa
cttaaagaactacctgaggctttcaccggtttgcagatggaaacagcaagtgtgcacaat
ggtaccagattttatgtgatggctgttacacctactcgactttattcgttcacagggatt
ggctcgcttgaagctgtttttgcaagctatgtggaccgtacagttcatttcatggaactt
cctggtgaaatacctaacagtgaactgcacttttttatcaagcaaaggagggctgtacac
ttcgcatggctttctggagcaggaatctaccatggtgacctaaaatttggagtgcaacat
agttcgccaaacggggatgaaaactttgtggaaaacaaagctcttctggactactctaaa
ttctctgaaggagttgaaggtgtcaaacctagctctctggctgtatccgagtttcatttc
ctactactcataggtaacaaggttaaggtggtgaaccggataagtgaacaaatagtagaa
gaactttattttgatcagacacctgacgcagtttcaagaggtatttttggcttatgtagt
gatgcctcagctgggttgttttatgcatatgaccaaaattccatcttccaggtgtctgta
aatgatgaaggccgtgacatgtggaaagtgtacttggacttaaaagaatatgctgcagct
ttggctaattgtcgtgatgccctgcagagagaccaagtttatctggttcaggctgaagct
gcttttgctgccaaggagttcctcagagctgcatcattctatgcaaaaattaactatgtg
ttatcatttgaagagatatcattgaagttcattagcataggtgaacaggatgcattgaga
acatttctcctgcggaagcttgataatctttcaaaggatgaaaagtgccaaataacaatg
atttccacatgggcaactgaattatatcttgataagatcaatcggctgcttctggaagat
gacagtgcattggacagtaataataccgagtaccaatcactcatcaaggagtttcgtgct
ttcctaagtgactgcaaggatgtattggatgaagcaaccacaatgaagctactagaaagc
tacggtagggttgacgagttagtgttctttgctagtctaaaggagcaatacgaaattgtg
cttcaccactacattcagcaaggagaagcgaagaaggcgttacaggttcttcagaagcct
aatgtttcaacggaacttcagtacaagtttgcgccagacctcatcatgcttgatgcatat
gaaactgttgagtcatggatgaccactaaaagtttgaacccgagaaagctcattcctgca
atgatgcgttattcaagtgaaccacatgcaaagaatgaaactcatgaagtaatcaagtac
ctggagtattgtgttcatcgtttacaaaatgaggatcctggcgttcacaatctgttactt
tccttatacgccaaaaaggaagatgagagtgctcttctgcgtttcctagaatgcaaggtt
ggtaaagggcaaccaggtggccctgaattcttttatgatcccaaatatgcgcttcgcctt
tgcctcaaggaaaagagaatgcgagcttgtgttcatatatacagcatgatgtctatgcat
gaagaagcagttgctctagcactacaggttgatccagagcttgcgatggctgaagcagac
aaggttgaagatgatgaggacttgaggaagaagctttggcttatgattgctaagcatgtc
attgagcaggaaaaaggaaccaaaagggagaatatacgaaaggcaattgcttttctcaag
gaaactgatggtctattaaagattgaggacatcttacccttcttcccagactttgctcta
attgatgacttcaaggaagcaatttgctcatccttagaggattacaacgagcaaattgaa
aaattaaagcaggagatgaatgatgcaacccgtggtgccgataacattagaaatgacatc
agcgctcttgctcagcgatatactgtcattgattgggatgaggaatgtggggtttgtcga
cggaaaatattaaatgtgggtggtgattatcgaatgactagaggttatatggctgttgga
ccaatggctcccttctatgtctttccatgtggtcatgcgtttcatgcacaatgcctgata
gctcacgtgactaggtgtactaatcaagctcaagccgaatacattctggatctgcagaag
caacttactttacttggtgctgaatctaagaatgtgtcaaatggtggcttgtctgaagaa
ccactagttagcgtgactcccatgcataagatccggtcacagctggatgatgctgtagcc
agtgattgcccattttgtggtgaccttatgatccaagaaatttctttgcctttcatcctt
ccagaagaagcagaagaatctgaatcgtgggagataaaaccacataatcatcctagtcag
agaagcctttccttggctgtgtga
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