Nicotiana attenuata (coyote tobacco): 109235560
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Entry
109235560 CDS
T05870
Name
(RefSeq) DNA excision repair protein ERCC-8-like isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03420
Nucleotide excision repair
nau04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109235560
09124 Replication and repair
03420 Nucleotide excision repair
109235560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nau04121
]
109235560
03400 DNA repair and recombination proteins [BR:
nau03400
]
109235560
Ubiquitin system [BR:
nau04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
109235560
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
109235560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_SCAP
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_LRRK2
Beta-prop_RIG_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
109235560
NCBI-ProteinID:
XP_019257267
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Position
12:complement(35658321..35667382)
Genome browser
AA seq
465 aa
AA seq
DB search
MRGRCGRRLQTENLGSFALIYSAIVLSRLESLLFNSPTTKISFLLTVAPSTPYRSLSPFL
DLRFEAEGRYLLSSASDASVAVYDVQRATDYDGSGLIAKHKPIVVVDKQHEQGHKYAIST
AIWYPIDTGLFITGSYDHYINVWDTNTTQVAVNFKMPGKVHKTAMSPVATSHMLIAAGTE
DVQVRLCDISSGAFAHTLSGHRDGVMSVEWSASSEWVLVTGGCDGAIRFWDIRRAGCFRV
LDQSHSQLGRRPTLLARSVTNKSSAVKSSSVGPSSSAKGRPSHKKMGNGMSIKQSAIARQ
VRGAGKQRLHPGMLSSQDRATAHYGAVNGLKVTNDGMYLLSAGSDSRLRLWDIESGCNTL
VNFETSRLQATKAIQLATSHDSKLVFAPCMSTTKAFDLWSGKTIMDLRGHYENVNCCLYS
ALDQELYTAGNDRKILVWSSSKVATEELEGRDGQPFAIDQDNWSD
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggaagatgtggaaggagattgcagaccgagaatttgggaagcttcgccctaatt
tattcagcaattgtattaagtcgtctcgagtctcttctcttcaactctccaactacaaag
atatcatttctcctcaccgtggctccgtcaactccctacaggtcactttccccatttctc
gatctacgatttgaagctgaggggcgatatctgttatcctctgcttcggatgcatcagtt
gctgtttatgatgtccaacgtgcaactgattatgacggaagtggtctgattgcaaagcat
aagcccatagttgtggttgacaagcaacacgaacaggggcacaagtatgccatttccaca
gccatctggtatccaattgacactgggcttttcatcacgggctcatatgatcattacatt
aatgtttgggatactaacactactcaggtggcagttaatttcaaaatgcctggaaaagtg
cacaagactgccatgtctcccgtggcaacatcacacatgttgattgctgctggaactgaa
gatgttcaagttcgtctttgtgatatttcttcgggtgcatttgctcacactttatctggc
catcgtgatggagtaatgtcagtcgaatggtctgcttctagtgagtgggttttggtaaca
gggggatgcgatggtgccattcgcttttgggacatcaggcgtgcaggatgctttcgtgtt
ttagatcagtcccattctcagcttggaagacgcccaactctacttgcacgttctgttaca
aacaagagttccgcggtaaaatcatcttcagtaggcccaagttcatctgcaaaaggccgg
ccatctcataagaaaatggggaatggtatgagtatcaaacagtctgcaatagctagacaa
gtgaggggagctggaaaacagagactacatccagggatgctgtctagtcaggatagagcc
actgctcattatggtgctgtcaacggactaaaagttaccaatgatggaatgtatcttctt
agtgcaggttctgattctaggttaaggttatgggatatcgaatctggttgcaatacactt
gtaaactttgaaacatcacgactacaggccaccaaagctatacaattagccacctctcat
gattcaaaacttgtatttgcgccatgtatgtcaacaactaaggcatttgatttgtggtcg
ggcaagacgattatggatttacgtggacactatgaaaatgtgaactgttgtctgtacagt
gcactggaccaggaactatacacggctggaaatgatcggaaaattctcgtgtggtcttca
agcaaagtcgctactgaagaattggagggcagggacgggcaaccttttgcgatcgatcaa
gataattggagtgactga
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