Nicotiana attenuata (coyote tobacco): 109237468
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Entry
109237468 CDS
T05870
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109237468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109237468
03012 Translation factors [BR:
nau03012
]
109237468
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109237468
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109237468
Translation factors [BR:
nau03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
109237468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
AAA_16
T2SSE
ABC_tran
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
109237468
NCBI-ProteinID:
XP_019259322
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MHSRVGFLLACTKRRSSYFSTCSALLSNLFSSNSNRNIFAACQRQILIGSDVSKVYYLPD
SNFRWLGQLRGFCRYPATAALEQFSDDEYECDYENHPASSSVANIDEWKWKLSLLLRNKK
DREVVSRDKRDRRDYEQICNLAKRMGLYSEIYGKVVVVSKVPLPNYRPDLDDKRPQREVV
IPLSLQRRVEGLLQEHIDRTQLISGKAENILDGTNSSDMVEDANLDENPDSFLDGSVMEK
VLQRRSLRMRNMQRAWQESPDGNKMLEFRKSLPAFKEKERLLQAIARNQVVVISGETGCG
KTTQLPQYILESEIESGRGAFCSIICTQPRRISALAVAERVATERGEPLGDSVGYKVRLE
GVKGKNTHLLFCTSGILLRRLLSDRNLDGITHVFVDEIHERGMNEDFLLIVLKDLLPRRP
DLRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRAHFLEDLLEITGYKLTSFNQIDDY
GQEKMWKTQKQLAPRKKKNQITALVEDALNKSNFESYSARARDSLACWAPDCIGFNLIEA
VLCHICRKERPGAVLVFMTGWEDISCLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLI
FEKAPQNVRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASA
RQRRGRAGRVQPGECYHLYPRCVYEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLS
AALQPPESLAFHVLQVQNAIQFLKMIGALDENEYLTHLGKFLAILPVDPKLGKMLIMGAI
FRCFDPVLTIVAGLSVRDPFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAER
EGSAYEYCWRNFLSAQTLQAIHSLRKQFIFILKDAGLLDADTAANNKLSYNQSLVRAVIC
SGLYPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIR
DSTGVSDSIVILFGSTLDCGDTAGHLKMLGGYIEFFMDPTLADCYIKLKEELEMLLQKKL
QDPEVDIHKEGKYLMLAVQELVSGDQCEGRFVFGRENKRPKDSKDTDRFTRDGTNPKSLL
QTLMMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKALAEKDAAIEALAWLTQ
TSEKNHDEDDKSPPDVTDNMLKLLGKRRRSKRR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgcattcgagagtagggtttctcttagcatgcacaaaacggaggtcttcttatttttct
acttgctctgcacttctctctaatctattctcttccaattcaaaccggaatatattcgcg
gcttgccagcggcaaattttgatcggcagtgatgtaagtaaggtttattatttaccggat
tcgaattttcgttggttgggacagctgcgtgggttttgtagataccctgctaccgccgcg
ttggagcaattctccgacgatgaatatgaatgcgactacgaaaatcatccggcttcatca
tcagtggccaatatagatgagtggaaatggaaacttagcctgctgctgcgtaacaaaaag
gaccgagaagttgtatccagagataagagggatagaagagactatgagcagatatgcaac
cttgccaaaaggatgggtctctatagtgaaatttatggaaaagttgtagtggtgagcaag
gttcctcttccaaattacagacctgatcttgatgataagcggcctcaaagagaggtagta
atcccactaagtttgcaaaggagagtagaaggcttgcttcaggagcatattgatagaaca
cagctcattagtggaaaggctgaaaacattttagatggaactaactcctctgatatggtt
gaagatgcgaacttggatgaaaatccagattcattcttagatggctctgtcatggagaag
gttcttcagaggcggagcttacgcatgcgtaatatgcagagggcttggcaggaatctcct
gatggcaacaaaatgctagaattccggaaatctcttcctgcatttaaggaaaaagaaagg
ttgctccaagcaattgcacgtaatcaggtggttgtaatttctggcgagacaggatgtggt
aagaccactcaactgccacagtacattctagagtcagaaatagaatctggtcgtggagca
ttttgtagcataatttgtacacagcctcgaagaatatctgctttggcggttgcagaaaga
gtggctacagagaggggagaacctcttggtgactcagtggggtacaaagtacgattagaa
ggggtgaaaggaaaaaatacacatttactattttgcacgagtggtattttgcttcgtcgt
cttctcagcgaccgcaatcttgacggtataacccatgttttcgttgatgagattcatgag
cgaggcatgaatgaagacttcctgttgattgtgttgaaggatcttcttccacgacgccca
gatttgagattgattttgatgagtgctactcttaatgctgaattattttccagttacttt
ggaggggcaccaatgattcatattccgggcttcacatatcctgtaagagcacattttctg
gaagatttgctggaaataacagggtataagttgacttcgttcaaccaaattgatgattat
ggtcaggagaagatgtggaaaacacaaaaacagttagcaccccgcaaaaagaaaaatcag
ataactgctcttgttgaggatgctctaaacaaatcaaacttcgagagttatagtgcaagg
gcacgtgattcactagcatgctgggctcctgattgtattggattcaatcttattgaggcg
gttttgtgccatatatgtcgaaaagaacgtccaggtgctgtattagtatttatgactggt
tgggaagatattagttgtttaagagatcaacttaaagcccatcctctcttgggagaccca
aatagagtgttgttgctcacttgtcatggttctatggcaacctctgagcagaaactcata
tttgagaaggcacctcagaatgtacgtaaaatagtacttgcaacaaacatggccgaggca
agtattactataaatgatgtagtctttgtagtggactgtggaaaagcgaaggagacgacc
tatgacgcgctaaataatactccatgtttattaccttcatggatttcacaagcctctgcc
cgacaaagaaggggcagggctggccgtgtgcaaccaggcgagtgttaccacttatatcca
cgatgtgtttatgaagcttttgctgaatatcaactacctgaactcctgagaactcctttg
aattctctttgcttgcaaataaagagtttgcaggttggaagtattgctgaattcctatca
gctgctcttcagccgccagaatcattggctttccatgtattgcaggtgcaaaatgctatt
cagtttttgaagatgattggtgcattagatgaaaatgagtatcttacacatctaggaaag
tttttagcaattctccctgtggatcccaagcttgggaaaatgctcattatgggtgctatt
ttccgttgctttgatcctgttttgactatagtggctggtcttagtgtgcgggatccattt
ctattgccgcaagacaaaaaggatttagcggggaccgcaaagtctagattctcagcaaaa
gactatagtgaccatatggcgcttgtccgtgcatatgaaggatggaaagatgctgaaagg
gaaggttctgcctacgaatactgctggaggaatttcctctctgcccagactcttcaagca
atccattctcttagaaagcaatttatcttcatcttgaaagatgctggattgcttgatgct
gatactgcagctaacaataaactaagttacaatcagtctttggttcgtgcagtcatatgt
tctggcttgtatcctggaatcgcatcggtagtgcacagagagacatcaatgtccttcaag
actatggatgatggacaagtcttgctttatgctaattcagtcaatgctcgttatcaaaca
attccatacccttggttggtgtttggtgaaaaagtgaaggtcaatacagtcttcatacga
gattctactggagtatctgattcgattgtgatcctatttggtagtactctagactgcgga
gatacggctgggcatttaaagatgttgggtggatacatagagttcttcatggatcctact
cttgcggattgctacataaagctcaaagaagagcttgaaatgcttttgcaaaagaagctt
caagatcctgaggtcgacatccacaaggaaggcaaataccttatgcttgcagttcaggaa
ctggtttcaggagatcagtgtgagggaaggtttgtgtttggtcgtgaaaacaagaggcct
aaagattctaaagacactgatagatttacaagggatgggacaaacccaaagagtttgctg
caaaccctaatgatgagggcaggtcactcccctcccaagtacaaaacaaagcatctaaaa
acaaatgaatttagggcacttgtagagttcaagggaatgcaatttgtaggtaaaccaaag
agaaacaaagctcttgcagaaaaggatgctgcaatagaggcactagcttggttaactcaa
acttctgagaagaatcatgatgaagatgataagtctcctcctgatgtcaccgacaacatg
ctgaaacttcttggtaaacgcaggagatcaaagcgtcgctga
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