Nicotiana attenuata (coyote tobacco): 109237812
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Entry
109237812 CDS
T05870
Name
(RefSeq) polyadenylate-binding protein 3-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03015
mRNA surveillance pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109237812
09123 Folding, sorting and degradation
03018 RNA degradation
109237812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109237812
03041 Spliceosome [BR:
nau03041
]
109237812
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109237812
mRNA cycle factors
Stress granule specific factors
109237812
Spliceosome [BR:
nau03041
]
Complex C
Other components
Complex C specific factors
109237812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_RdRP1_2
RRM_7
RRM_3
RRM_MARF1
RRM_YTH1
SET_assoc
AsnRS_N
DUF848
Motif
Other DBs
NCBI-GeneID:
109237812
NCBI-ProteinID:
XP_019259743
LinkDB
All DBs
Position
Unknown
AA seq
656 aa
AA seq
DB search
MAATAVPPPAVQTQAETTTVGATPPPTPQVAMGGGGNGSGGVGVTTSTNYALYVGDLDTS
VEEGQLYEVFNHVAQVVSVRVCRDQSGRFSLGYAYVNFASPHDAATARELLNFSQLNGKP
MRIMFSHRDPSLRKSGYANVFIKNLDSSIDNKALYDTFAAFGTVLSCKVVVDSNGQSKGY
GFVQFDQDEAAHNAIKRLNGMLINDKQVYVGHFIRRQERSQANASDKFTNVYVKDLPETT
TDEDLKKLFEKYGTITSAVVMKDKNGKSKCFGFVNYESSDAAASAVEQLSGSSLKEKVLY
VGKAQKKSEREAELKAKFEQERARRFEKLKGANLYLKNLDDSVNDENLKELFSEYGTITS
CKVMRDSKGVSKGSGFVAFSTPEEATRALNEMNGKLIGKKPLFVAVAQRKDERRAWLQQA
HFARMRPAGGMAPPPMPGFHNGAPRLAPQQVYFGQGAPRLIAPQAAGFGFQQQLMPGLRP
AVGPNFLLPYQLQHQGQHGRVGRRRGGNTQQQQQWNSGRFNPNGRNGMHPSITQGMMGPI
MPAPFDASAMTSSTLDIQRTNPGPPSTLASSLAFASPEDQHRMLGEQLFPLVERIERDHA
GKVTGMLLEMDQTEVLHLIESPDALNKKVSEAMDVLRLAGPGSSVGDKFGSLTLNG
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacggcggttccgccaccagcggtgcaaactcaggcggaaacgacgacggtc
ggagcgacaccaccgccgactccgcaggtggcaatgggaggtggtggtaacggtagtggt
ggtgttggtgtgacgactagtacgaactatgccctgtacgtaggggatctggacacgtca
gtggaagaaggacaactgtatgaggtgtttaaccacgtggcacaagtcgtgtccgttagg
gtttgcagggatcaatcgggccggttctccctcggttacgcttatgtcaatttcgcttct
ccacatgatgctgctactgctagggagttattgaattttagtcagttgaatggaaaacct
atgaggataatgttttctcatagagatcctagtctgcggaagagcggatatgcaaatgtt
ttcattaagaatctggactcgtcaattgataacaaggcattgtatgacacttttgctgcc
tttggaacggttctttcctgcaaggtagttgttgatagtaatggtcagtcaaaaggatat
ggatttgtgcaatttgatcaggacgaagccgcacacaatgcaatcaagcgtctaaatggt
atgttgataaatgataaacaagtctatgttggccacttcatccgtcgacaagaaaggagt
caagcaaatgcctctgataaattcacaaatgtgtatgtgaaagaccttcctgaaactacc
actgatgaggatcttaagaagctttttgagaagtatggaaccatcaccagtgctgtagtt
atgaaagacaaaaatgggaagtccaagtgttttggcttcgtcaattatgagagctcggat
gctgcagcctctgctgttgaacagttgagtggcagttccttgaaagaaaaagttctgtat
gtaggcaaggcccagaagaaatcagaacgcgaagcagaactgaaagccaaattcgaacaa
gaaagagctagacgatttgagaaactaaaaggtgctaacttgtatttgaaaaatctcgac
gacagtgtgaatgatgaaaatctgaaagagttattctcggagtatggaaccataacgtcc
tgcaaggtgatgcgcgactcaaaaggggtgagcaagggttctggctttgttgccttctcc
acccccgaggaagctacacgagctttgaacgaaatgaatggcaagttgataggaaagaaa
cctttatttgttgctgttgcccagcgcaaggatgaaagaagagcatggctacagcaggca
cattttgctcggatgcgaccagctggggggatggctcctcctcctatgcctgggtttcac
aatggggcacctcgacttgctcctcagcaggtctactttggtcaaggtgccccaagactt
atagcacctcaagccgctggatttggcttccagcaacaactcatgcctggacttcgtcca
gctgttggcccgaatttcctcttgccctatcagcttcagcatcaaggacaacacggacgt
gttggtagaaggagaggagggaatactcaacagcagcagcagtggaactccggtagattc
aatcccaatggacgaaatggcatgcatcctagcatcactcaaggtatgatgggaccaatt
atgccagcgccatttgatgcttctgctatgacatcatctacgttggacatccaacgcact
aacccagggccaccatcaacacttgcttcttctttggcctttgcttctccagaagatcag
catcggatgcttggagagcagttatttccacttgtggaacgcattgaacgtgatcatgct
ggtaaagttactgggatgttgcttgagatggatcaaactgaggtgcttcatctcatcgag
tcccctgatgctctcaataagaaagtttccgaggctatggatgttcttcgcttagcaggg
ccaggttctagtgttggtgacaaatttggatctctcaccctgaatggatga
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