Nicotiana attenuata (coyote tobacco): 109238777
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Entry
109238777 CDS
T05870
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
nau04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109238777
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109238777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nau03041
]
109238777
04121 Ubiquitin system [BR:
nau04121
]
109238777
03400 DNA repair and recombination proteins [BR:
nau03400
]
109238777
Enzymes [BR:
nau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109238777
Spliceosome [BR:
nau03041
]
Complex B
Other components
Prp19 complex
109238777
Complex C
Prp19-CDC5 complex
109238777
Ubiquitin system [BR:
nau04121
]
Ubiquitin ligases (E3)
U-box type E3
109238777
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
109238777
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40
Beta-prop_EML_2
Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
DSE1_N
Beta-prop_NOL10_N
Beta-prop_Vps41
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
CFAP251_N
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_HPS5
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_VPS8
Beta-prop_SCAP
Beta-prop_DCAF12
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_WDR41
PEP5_VPS11_N
U-box
PROPPIN
PAC11
zf-Nse
Beta-prop_DCAF4
KNTC1_N
Beta-prop_ACSF4
ASA1
WD40_like
WDR54
PAS_11
B_lectin
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
109238777
NCBI-ProteinID:
XP_019260799
LinkDB
All DBs
Position
Unknown
AA seq
521 aa
AA seq
DB search
MNCSISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPVTGEPLTADDIIPVKTGKIVK
PRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDEARGLLAQAERQIPMAATTAVGATALSNGKRAAEDEEMGPDGKKIRPGISNSVIETL
TECNAALSQQRKKRQIPATLASVDALERYTQLNSYPLHKTNKPGILSLDIHYPKDLIATG
GVDSNAVVFDRPSGQIISTLSGHSKRVTSVKFASEGELVVSGSADKTVRVWQSSENGNYD
CRHVLKDHTAEVQAVTVHATNNYFVTASLDSTWCFYDLASGLCLAQVADATESEGYTSAA
FHPDGLILGTGTSGSLVKIWDVKSQANVARFDGHVGSVTAISFSENGYFLATAAHDGVKL
WDLRKLKNFRNFSLYDENTPTQSVQFDHSGSYLALGGSDIRVFQVASVKAEWNHIKTLPD
LSGTGKATCLKFGPDAKYIAVGSMDRNLRIFGLPGEDQMES
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atgaactgttcaatttccggcgaggtgccggaggatccggtggtgtcgaagaagtccgga
ctccttttcgagaagcgtttaatagaaagacacatctctgattatggtaaatgtcctgtt
accggagagccattgacggcagatgacattatccctgttaaaactggcaagatagtgaaa
ccccgacctgtacaggctgctagcatccctgggatgttgggaatgtttcaaatagaatgg
gatggtctgatgctgtcaaattttgcattggaacaacaattacatactgcaaggcaagag
ctgagtcatgctttatatcagcatgatgctgcctgcagagtaattgccaggctgaaaaag
gaaagggatgaggcaagggggttgcttgcccaggctgaaagacaaatacccatggcagcc
actacagcagttggtgctactgctttaagcaatgggaaaagagctgccgaggatgaggag
atgggtcctgatggcaagaaaattcgccctggaatatcaaactctgtcattgagactctt
acggaatgtaatgctgctctttcacaacaaaggaaaaaacgacagataccggcaacactg
gcctctgtggatgctctggaaagatatacccaactgaatagttatcctcttcacaaaacc
aacaaacctggcattttgtctttggatattcattatcctaaggacttaattgctactggt
ggtgttgattcaaatgctgtggtcttcgatcgtccttcaggacaaatcatatcaacactg
agcggtcattcaaagagggttaccagtgtaaaatttgcatctgagggtgaactagtggtc
tctggctcagcagataagacagttcgtgtgtggcaaagttctgaaaatgggaactatgac
tgtaggcatgtcttgaaagatcatacagcagaggtgcaagctgtcactgtccatgcgacc
aataactattttgtgactgcttctcttgatagcacatggtgcttttatgatcttgcttct
ggcttatgccttgcacaggtggcagatgctacagaatctgagggctacacatccgcagct
ttccaccctgatggtctgatccttggaacagggacctcagggtctctggttaagatatgg
gatgtaaaaagtcaggcaaatgttgcaagatttgatggccatgttgggtctgtaactgct
atttccttttcagaaaatggttatttcttagcaactgctgctcatgatggtgttaaactt
tgggatttacgcaaattgaagaatttccgaaatttctctctttatgatgaaaatacaccg
actcaatcagtgcaatttgaccatagtggaagttatcttgccttaggaggctcagatata
cgagttttccaagtcgccagtgttaaggctgaatggaatcacatcaaaaccctccccgac
ttatcaggcacaggtaaagcaacatgtctgaaatttggtccagatgcaaaatacatagct
gtcggatctatggaccgtaatttaagaatatttgggctgcctggcgaggatcaaatggag
agttag
DBGET
integrated database retrieval system
