Nicotiana attenuata (coyote tobacco): 109241243
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Entry
109241243 CDS
T05870
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03015
mRNA surveillance pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109241243
09123 Folding, sorting and degradation
03018 RNA degradation
109241243
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109241243
03041 Spliceosome [BR:
nau03041
]
109241243
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109241243
mRNA cycle factors
Stress granule specific factors
109241243
Spliceosome [BR:
nau03041
]
Complex C
Other components
Complex C specific factors
109241243
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_3
RRM_occluded
Nup35_RRM
RRM_7
MARF1_RRM1
SET_assoc
HPS3_C
Motif
Other DBs
NCBI-GeneID:
109241243
NCBI-ProteinID:
XP_019263511
LinkDB
All DBs
Position
Unknown
AA seq
654 aa
AA seq
DB search
MAQVQVQQQQPHGSVNNAGGVNNQFVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCR
DLTSQRSLGYGYVNYGNPQDAARALEVLNFTPLHGKPIRIMYSNRDPTIRRSGNGNIFIK
NLDKAIDHKALHDTFSAFGNILSCKVAVDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLL
NDKQVYVGPFVRKQERDMAVDKTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKD
EDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAK
EAVDKSQGLNLYIKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPE
EASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPG
GPGLGQQIFYGQPPPAMLPPQVINRRAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQG
QRPGGRRGGAVPSQQGQQPVPLMQQQMFPRGRGYRYPPGRGLPDGAFPGVGGGMFSIPYD
MGGMPVRDAGIVQPIPVGALATALANASPTEQRTMLGENLYPLVEQLEPETAAKVTGMLL
EMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSNPADQLASLSLNDGLVS
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggcacaggttcaggtgcagcagcagcagccacacggtagtgtgaataatgctggtggt
gtgaacaaccagtttgtgacgtcactgtacgtgggtgaccttgatgtcaatgtgaccgat
tcacagctttatgatctgttcaatcagctggggcaagttgtttcggttcgggtttgcaga
gacttgactagccaacggtcgctcggttatggttacgtcaattatgggaaccctcaagat
gctgcaagggcgttggaagtgctgaactttactcctctccatggaaagccaatcaggata
atgtactcaaatcgagacccaactatacgaagaagtggcaatgggaacatatttattaag
aatttggacaaggcaattgaccacaaagcattacatgatacattttctgcatttggaaac
attctctcttgtaaggtagctgtggattcatctggtcaatccaagggctatgggtttgtg
cagtatgacagcgatgaagctgcccaaaaagctattgagaaactgaatggtatgctgctg
aatgataagcaagtatatgtaggacccttcgttcgtaagcaagaaagagatatggctgtg
gataagacaagatttaccaatgtcttcgtgaagaatttatctgaatctacgttagaggaa
gagctcaggaaaatctttggtgaatttggtactattactagcgtcgcagttatgaaggat
gaagatggaaaatccaggtgctttggatttgtcaactttgagaatgctgaagatgctgct
agagctgttgaagctctgaatggttacaaattggataacaaagattggtttgtaggaaga
gctcagaagaaatcagagagggaaatggaattaaaacatcggtttgagcaaagtgccaag
gaggcggttgacaaatcacaaggtttaaatctatacataaaaaatttagatgacagcatt
agtgatgacaagcttaaggaattgttctctccgtatggcacaatcacttcatgcaaggtt
atgagagatcctagtggggtaagcaaaggatcaggatttgttgcattctcaacccctgaa
gaggcttcaagagcgctctcggagatgaatggaaagatggttgttagcaaacctctgtat
gttgcccttgcgcaacgcaaggaagagagaagagcaaggttacaggctcagttttctcag
atgcgtccaattgcaatggcatcttcagttgctcctcgaatgccgatgtaccctcctggc
ggtcctggtctaggtcaacaaatattctatggccagccaccaccagctatgcttccccca
caagtaataaatcgtcgtgctggttttggatatcagcagcaacttgtacctggaatgagg
cctggtgggggacccatgcctaatttctttatgcccatggttcagcaagggcagcaaggt
caacgtcccggaggccgacgcggaggtgctgttccatcgcagcagggacagcagccagtt
ccattgatgcagcaacagatgtttccaagagggcgtggctatcggtatcctccaggacgt
ggcctccccgatggagcttttccaggtgtaggtggtggcatgttctctatcccatatgat
atgggtggcatgcctgtgcgtgatgcaggaattgttcaacctattccagtaggggctttg
gctactgctctggctaatgcttctccaacagagcaaaggacgatgctaggtgagaacttg
taccccttggtcgaacagctggagccagaaacggctgccaaggtgactggcatgctcttg
gagatggaccagactgaggtattgcacttgcttgagtcgcctgaagccctgaaagccaag
gttgcagaggctatggaggttctgaggaatgtttctcagcagcagtcgagcaatccggct
gatcagttggcttcattgtcactgaatgatggtctggtttcttaa
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