Nicotiana attenuata (coyote tobacco): 109241397
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Entry
109241397 CDS
T05870
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nau04131
]
109241397
Membrane trafficking [BR:
nau04131
]
Protein recycling
Others
EARP complex
109241397
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
109241397
NCBI-ProteinID:
XP_019263685
LinkDB
All DBs
Position
Unknown
AA seq
1108 aa
AA seq
DB search
MQSNSSSSSSSAPPFPLIPLVLLNGGQGQLSEGGFELSRFLFLGSLLFSSQGAGYGDGGM
DLSKVGEKILSSVRSARSLGLLPSSSDRPEVPERAAAAAALARVLAGLPPHQRHALSSSS
EELSSIYGSKPPGQVVEELEEEFYEEEFDPVGHILEHIPSEDGELAYLEEQAALRLAQLD
RISERLSRHVMEHHEVMVKGMDLVRQLERDLKIANVICMNGRRHLTSSRNEVSRDLIVST
NSKRKQALNCFPLQDVLPVLTELRHALDMQSTLETLVEEGRFSKAFQVLSEYLQILDTLS
ELSAAQEMSRGVEVWLGKTLQKLDSLLLGVCQDFKEENYVTVVDAYALIGDVAGLAEKIQ
SFFMQEVLSETHSVLKTTVQEDLDNTNVQSTRLTYSDLCTQISESKFRQCLLATLAVLFR
LMCSYHAIQSFQPEDKDDISSPSIERAPILSSVEDPLPTSAAPCDTEMHGSSNINFRVEE
ARDDGSTASSSGSPWFQLRKDATTFVSHTLLRGRKNLWQLTTSRAAVLLSSPAIYSASIH
QFLTTYEDLNIFVLAGEAFCGSKAVEFRQKVKSVCENYLAAFHRQNIYALKMVLEKENWL
ILPPETIEVVSFAGLVGDGAALIVSSETSPSARLPHKSVHPIQTDSKRNGFSSWLKGGNP
FLPKLNGSSKEYLDSCLLNGSATQESGNSNEDSFDKSSSLTNSDVNHVNGNASLSEDENE
DLHADFIDEDSQLPSRIAKPGHSRNRSSHWNTEQIKAQTGSSLSLLRLLDKYARLIQKLE
IVNVEFFKGFCQLFGIFFHFVFETFGQQSTHPSGKAVTDTLPYRLKTALSRITQDCDQWM
KPQSQSFSSSPPSSSSTSFSHMDVTPTSPPSYLTGASLGLKERCAGADTIYVVARLLHRS
KAHLQSMLLQNNGALVEDFYVHLVDAVPDLVDHIHKTTARLLLHINGYVDRIANAKWEVK
ELGVEHNGYVDLLLGEFKHYKTRLVHGGIQKEVQDLLLEYGVDNVAEILVEGLSRVKRCT
DEGRALMSLDIQVLINGLKHFISVDVRPKLQIVETFIKAYYLPETEFVHWARAHPEYSKG
QIVGLINLVSTMKGWKRKTRLEVLEKIE
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcaaactcttcttcttcttcttcttctgctccgccttttcctttaattccactg
gttcttttaaatgggggtcaaggtcaattgagcgaaggtgggttcgaattatctaggttt
ttgttcttaggttctttgctcttctcttctcaaggagctggctacggcgacggtggcatg
gacttgtctaaagttggagagaagattttgagttccgttcgctccgctagatctcttggc
ctcctcccttcttcttccgatcgtcctgaggttcctgaacgagctgcagctgctgctgca
cttgcacgtgttctagctggactacctccccatcagagacatgctctgtcatcaagctca
gaggaattgagctctatatatgggagcaaacctcctggtcaagttgttgaggagctggag
gaagaattctatgaagaggaatttgatcctgtcggacatattctggagcatattccttct
gaagatggtgaactggcttacttggaagaacaggctgctcttagattagcacagctggac
agaatttctgaacgcttgtcacgccatgttatggagcatcatgaagtgatggtgaaggga
atggatcttgtacgacaactggaaagagacttgaagattgcaaatgtcatatgcatgaat
ggtcgcagacatttaacttcttcaaggaacgaggtgtcaagggatctcattgtctccaca
aattctaaaagaaaacaagcactgaattgtttccccttgcaggatgtgcttccggtcctg
actgagctgcgtcatgcactcgacatgcaatcaactcttgaaactcttgttgaggaagga
agattctcaaaggcgttccaagtactatcagaatatttacaaattttggacacactttcg
gagctttctgccgcacaagagatgagccgtggtgttgaggtttggctagggaagactctt
caaaagctggattcacttttattaggagtgtgccaggatttcaaagaggagaactatgta
actgtagttgacgcttatgcacttattggagatgttgctggccttgctgagaagatacag
agtttctttatgcaggaggttctatctgaaacccactctgtgctgaagactaccgtacaa
gaggatctggacaacaccaatgtgcaaagcactaggctcacatatagtgatctgtgcacc
cagatatccgaatccaagttcaggcaatgcttgttagcaacactagctgtactttttagg
ttgatgtgttcatatcatgcaatacagagcttccagcccgaggataaggatgatatttcg
tcaccaagcatagagagagcgccaattttatcctctgttgaagacccactacctacttct
gctgctccatgcgacaccgaaatgcacggctcgtccaatataaattttagggttgaagag
gcaagggatgacggaagtacagcatcaagcagtggatccccctggtttcaactgaggaaa
gatgccacgacctttgtttcacatacattacttagaggtcgaaagaatctttggcaactt
acaacaagtcgtgcagctgtattgctttcttcacctgctatttattctgctagcatccat
caattcttaacaacttatgaagatttaaacatttttgtacttgctggggaagcattttgt
gggagtaaagcagttgagttcaggcagaaagtgaaatctgtttgtgaaaattatctagct
gctttccatcggcaaaatatttatgctctcaagatggtgctggaaaaggagaattggctg
atattgccaccggagacaatagaagtagttagctttgctgggcttgttggtgatggagca
gctttgatagtttcatctgaaacttctcccagtgctcgactgccacataaatctgtacat
cctatacaaactgactctaagaggaatggattttcaagttggcttaagggtggaaaccca
tttctgcccaaactaaatggtagttcgaaggaatacttggactcttgtttgcttaatgga
tctgcaacgcaagaaagtggaaactccaatgaagattcttttgataagagttcttctttg
acaaacagtgacgtaaatcatgtcaatgggaatgcttctttatctgaagatgaaaatgaa
gatcttcatgctgattttattgacgaagatagccaactacctagccggattgctaaacct
ggtcattcaagaaatcgctcttcacattggaacactgaacaaataaaagcacaaacagga
tcatcacttagcctcctgaggttattggataaatatgcgaggttgattcagaagttagag
attgttaatgttgagttttttaaggggttttgccaattgtttgggatcttctttcacttt
gtctttgagacctttggtcagcaaagtactcatcctagtggaaaggctgtgactgacact
ctgccgtataggcttaagactgcattatcacgaataacacaggattgtgaccaatggatg
aaaccccagtctcaatcattttcctcctctcctccctccagctcaagcacatcattttct
cacatggatgtcactcctaccagcccgccaagttacttaactggtgcatccttgggactg
aaggaaagatgtgcaggtgctgacactatatacgtcgttgctcggttattgcatagatct
aaagcacatcttcagtcaatgcttcttcaaaataacggggcacttgttgaggatttctat
gtgcatttggtggatgctgtaccggaccttgtagatcatattcataaaacaactgctaga
ttacttctccacataaatgggtacgttgatcggattgccaacgctaaatgggaggtgaaa
gagcttggagtagagcacaatggatatgtagatcttttgcttggagaatttaagcattat
aaaacaaggcttgttcacggaggaattcagaaggaggttcaagacctcctcttagaatat
ggagttgataatgttgctgaaattctcgttgaaggcctatctcgcgtgaagaggtgtact
gatgaaggacgagctcttatgtcgttagatattcaggtattgataaacggcttgaagcat
ttcatctctgtagatgtgaggcctaaattacagatagttgaaacattcatcaaggcctac
taccttccagaaaccgagtttgtgcactgggcacgtgctcatccggaatacagtaaaggt
cagattgttggtttaatcaacctagtctctacaatgaaaggctggaaaaggaaaaccagg
ttagaagtgttggaaaagatcgagtag
DBGET
integrated database retrieval system
