Nicotiana attenuata (coyote tobacco): 109241505
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Entry
109241505 CDS
T05870
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109241505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nau03021
]
109241505
03041 Spliceosome [BR:
nau03041
]
109241505
03036 Chromosome and associated proteins [BR:
nau03036
]
109241505
Transcription machinery [BR:
nau03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
109241505
Spliceosome [BR:
nau03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
109241505
Complex B
109241505
Complex C
U2 SnRNP specific factors
109241505
Chromosome and associated proteins [BR:
nau03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
109241505
TFTC complex
109241505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
WDR55
Motif
Other DBs
NCBI-GeneID:
109241505
NCBI-ProteinID:
XP_019263789
UniProt:
A0A314L5M5
LinkDB
All DBs
Position
Unknown
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQKPTGILCAINGSFSGGKVQEIAVARGKVLDLLRPDDNGKLQTLLSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
GIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITFSICGVDCGFDNPI
FAAIELDYAEADQDPTGQAANEAQKHLTFYELDLGLNHVSRKWSEQVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRRVDLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDRVKELKIKYFDTIPVSSSLCVLKSGFLFAASEFGNHALYQFQAI
GDDPDVEASSSTLMETEEGFQPVFFQPRKLKNLVRIDQIESLMPIMDMKIVNLFEEETPQ
IFSLCGRGPRSSLRILRPGLAVSEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQVLSLQSVSSPPESLLFLEVQASIGGEDGADHPASLFL
NAGLQNGVLFRTVVDMITGQLSDARSRFLGLRAPKLFSIVVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRVFTIERLGETFNETAIPLRYTP
RRFVLQPKRKMVIMIESDQGAYTAEEREAAKKECFETAGNGENGNAEQVENGEDEDGNDP
LSDEQYGYPKSESGRWVSCIRVLDPRSTQTTCLLELQDNEAAFSICTVNFHDKEHGALLA
VGTAKGLQFWPKKSFEAAYIHIYKFKEDGKVLELLHKTQVDGVPLALCQFQGRLLAGVGS
VLRLYDLGKKRLLRKCENKLFPNSITSIHTYRDRIYVGDMQESFHYCKYRRDENQLYIFA
DDTVPRWLTAAQHVDFDTVAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGA
PNKVEEIVQFHVGDVVSCLQRASLIPGGGECVIYGTVMGSVGAMLPFTSRDDVDFFSHLE
MHLRQEFPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtctcactctccaaaaacccaccggcatactctgcgccatcaacggc
agcttttccggcggcaaagtacaagaaatcgccgtcgcccggggaaaagtcctcgacctc
ctccgccccgacgacaacggtaagctccaaactttattatccgtcgaaatcttcggcgct
atacggtccttagctcaatttcgattaaccggtgcacaaaaagattatattgtagtcggg
tctgattcgggtcggatagtgatattagagtataataaagagaagaatgtttttgataaa
attcatcaggagacttttgggaaatcgggttgtagacggatagttccgggtcagtatttg
ggtattgacccgaaaggtagggctgttatgattggtgcttgtgagaaacagaagcttgta
tatgttttgaatagggatactgctgctaggttaactatttcgtcgcctttagaagctcat
aagagccacacgattacgttctcgatttgtggtgttgattgtggatttgataacccgata
tttgctgcgatcgagttggattacgcagaggcggatcaggatcctactggccaggccgca
aatgaggctcagaagcatttgacattttatgaattagatttagggcttaatcacgtgtcg
aggaagtggagtgaacaggttgataatggtgctaatttgctcgtgaccgtacctggtggt
ggggatggtccgagtggtgtgcttgtttgcgcagagaatttcgtgatatataagaatcag
ggacaccctgatgttagggctgttattcccaggagggtggatttgccagcggaacgtggg
gttttgattgtttcagctgctatgcataagcagaagtcaatgtttttctttcttttgcaa
actgaatatggagatatctttaaggtgacattggatcacgacaacgacagggttaaggag
ttaaagatcaagtattttgatacaattccagtcagttcttcgctgtgtgtcttgaagtca
gggttcctctttgctgcgtcagagtttgggaatcatgcattgtatcagtttcaagcgata
ggagatgatcctgacgtcgaagcttcatcatcgacgttaatggaaactgaagaaggtttt
cagcctgtatttttccagccaagaaagctaaaaaatcttgttaggatcgatcagattgag
agtttgatgccaatcatggacatgaaaatagtaaatctttttgaggaagaaactccacaa
atattttcactttgtgggaggggtccccggtcttcattgcgcatacttaggccaggttta
gctgttagtgaaatggctgtgtcacagcttcctggtgttcctagtgctgtctggactgtg
aaaaagaatgtcaatgatgagtttgatgcgtacattgttgtctcttttgcgaatgcaact
ctcgtgctttctattggtgagacagttgaagaagttagcgacagtgggtttcttgatact
actccatctcttgctgtttcattgattggtgatgattcattgatgcaagttcatcccagt
ggaataaggcatattagggaagatggccgtattaatgaatggagaactcctggaaagaga
actattgtcaaggttggatctaataggcttcaagtggtaattgcactaagtggaggggag
cttatatattttgaagtggatatgactggccagctgatggaagttgagaagcatgagatg
tcaggtgatgtagcttgtctggacattgcccctgttcctgagggaagacaaaggtcccgt
ttccttgcagttggatcatatgataacactattcgtatcttatcattggatcctgatgac
tgtatgcaggttctgagcctgcaaagtgtatcttcaccgccagagtctctcctttttctt
gaagttcaggcctctattggtggagaagatggtgcagatcaccctgccagtctttttctt
aatgctggtttacaaaatggggttttattcaggactgtggtggatatgataactgggcag
ctttcagatgcacgttcacgtttcttgggtcttagagcccctaagctcttttccattgtt
gtgagaggacggcgtgctatgctttgcttgtcaagtagaccgtggctaggttatatacac
caagggcattttcttttgacgcctttatcatatgagactcttgaatttgcagcctcattt
tcatcggatcaatgtgcagaaggtgtagtagcggttgctggggatgcgttgagggtcttc
acgatagagagattgggtgagactttcaacgaaacagctatacctttaaggtatacacca
agaaggtttgttcttcaacctaaacggaagatggtgataatgatagagagtgaccaggga
gcatatactgcggaagagcgtgaagctgctaaaaaggagtgcttcgagacagctgggaat
ggtgaaaatggaaatgcagaacaagtggagaatggtgaagatgaggatggtaatgatcca
ctatctgatgaacaatatggttatcccaagtcggagtcaggaaggtgggtttcctgcatc
agagtccttgacccaaggtcaacacaaaccacttgtctgctagagcttcaggataatgag
gctgcgtttagcatatgcactgttaatttccatgacaaggagcatggagctctgttagct
gttggtactgccaagggccttcagttttggcccaaaaaatcgtttgaagcagcatacatt
catatatacaaatttaaagaagatgggaaggtccttgagcttttgcacaagacacaggta
gatggtgtgcctcttgcattatgtcagttccaaggaagactactagctggtgtggggtct
gtccttaggttgtatgatttggggaagaaaagactgctcagaaaatgtgagaacaagctt
ttccccaactcaatcacatctatccatacctatcgtgatcggatttatgtgggtgacatg
caagagtcattccactactgtaagtatagacgtgatgaaaatcaactgtacatatttgct
gatgacacggttccgagatggctaaccgcagcacagcatgtagattttgacacagtggca
ggagctgacaagtttgggaatatctactttgtgcgattacctcaggatgtctcagatgag
attgaagaagaccctactggtggaaaaataaaatgggagcaggggaagctgaatggagcc
ccaaacaaggttgaggaaatagtgcagtttcatgttggtgatgtggtctcttgcttgcaa
agagcatcacttattccaggagggggtgaatgtgtaatttacgggactgtgatggggagc
gtcggggcaatgcttccatttacctcgagggatgatgttgacttcttctctcatttggag
atgcatttgaggcaggagttcccacctttatgtggcagggatcacatggcctacagatct
gcctacttcccggttaaggatgtgatagatggagacttgtgcgaacagttcccaaccttg
ccaatggatatgcagcgcaaaattgcagatgagttggacagaacaccaggcgagattttg
aaaaagcttgaagaaataagaaacaaaattatttga
DBGET
integrated database retrieval system
