Nicotiana attenuata (coyote tobacco): 109242843
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Entry
109242843 CDS
T05870
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau04120
Ubiquitin mediated proteolysis
nau04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
109242843
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
109242843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nau04121
]
109242843
Enzymes [BR:
nau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
109242843
Ubiquitin system [BR:
nau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
109242843
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
109242843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_EML
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
zf-C3HC4_2
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
zf-C3HC4
Beta-prop_TEP1_C
WD40_like
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF12
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
WD40_RFWD3
Beta-prop_WDR35_TULP_N
zf-C3HC4_4
eIF2A
U-box
zf-rbx1
zf-RING_5
Beta-prop_IFT122_2nd
zf-Nse
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
109242843
NCBI-ProteinID:
XP_019265255
LinkDB
All DBs
Position
2:complement(1031761..1040020)
Genome browser
AA seq
680 aa
AA seq
DB search
MEGGESSVGDFVPAMKSENLSSGELARGAAAAKSEQLLALPPPLAATTAEKEEDVDKEMM
CPICMQIMKDVFLTACGHSFCYMCIVTHLQNKRACPCCSVYLTVKQLYPNFLLNKLLMKT
SALQISRRATPLEQLSQAIQQGSEVSVKELESLLSLLMDKKRKMEQEEAESSLRIMLEFL
QFLRKRKVEELNEVENDLQFIKEDTSAVEEHRMELYRARCRYAAKMRMLLNDSSVVTIRP
SLIDKQGTGIISCSSISQRQGYAASDTSQNRKADARAPENVHMTDSDSQNSDQSGLVTAR
KRRICAQFDDIQGYYLQKRRHCTKQSHRQEERVANVINREGYCAELEDFQSVLSTITQYS
RLRVVAELRHADLFHSANIVSSIEFDRDDEFFATAGVSRRIKVFDFSSVVNEPADAQCPV
VEMSSRSKLSCLSWNKHTKNHIASSDYEGIVTVWDVTSRQSVMEYEEHENRAWSVDFSHI
DPSMLVSGSDDCKVKVWCMNQEASVISIDLKANICSVKYNPQSSFHIAVGSADNHIHYYD
LRNIKQPLHIFSGHHKTVSYVKFLSNNELASASTDGTLRLWDVKENIPLRTFGGHTNEKN
FVGLAVNSEYIACGSETNEVFVYQKAISKPVASHIFDSDQNDPDEDMGSHFISSVCWKRE
SPTILTANSQGIVQVLVLTA
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaggtgagagttcggtgggagatttcgtgcctgcaatgaaatcggagaattta
agttccggcgagttagcgcgaggggcggcggcggcgaaatcggagcaattgttagctttg
ccacctccattggcagcgacgacggcggagaaggaagaggacgtggacaaagagatgatg
tgtccgatatgcatgcaaataatgaaagacgtgttcctcacggcgtgtggacatagcttc
tgctacatgtgcattgtcactcatttacagaacaaaagagcttgtccctgttgctctgtt
tacttgactgttaagcagctttatcctaatttcctcctcaataagttattgatgaagacc
tctgctctccaaatatccagaagggccacacctttggaacaactttctcaagcaatacag
cagggaagcgaggtgtctgttaaagagcttgaaagcctcttatcacttcttatggacaag
aaaaggaaaatggagcaagaagaagctgaatcaagtcttcggattatgcttgagttcctc
cagtttttgaggaagcgaaaggttgaagagcttaatgaggttgaaaatgatctccagttc
attaaagaagatacaagtgctgtggaggaacatagaatggaattgtatagggcaaggtgt
agatatgcagcaaagatgagaatgctattaaatgattcttctgtggtgacaatccggcct
tcattgatagataagcaaggtactggcatcatttcttgctcctcaatttcacagcgacaa
ggatatgctgcttcagacacttcacagaacaggaaagcagatgcaagagctccagagaat
gttcacatgacggattccgactcacagaattctgatcaatctggacttgtgacagcaaga
aagagacgtatctgtgcacagtttgatgatatacaaggttattatttgcaaaagcggcga
cactgcacaaaacaatcacatagacaggaagaaagggtagcaaacgtcataaacagagaa
ggttattgtgcagaacttgaggattttcaatctgttctatctaccattacacaatacagt
cggttgcgggttgttgctgaacttaggcatgccgatcttttccactcagctaatattgtc
tcaagtattgaatttgatcgagatgatgaattttttgctacagctggtgtgtcgagacga
atcaaggtctttgacttctcatcagtggtaaatgaaccggctgatgcacaatgtcctgtt
gttgaaatgtcttcacgatccaaacttagttgtctgagctggaacaagcacacaaagaac
cacatcgcgagcagtgactatgaaggcatagtaaccgtttgggatgtgaccagtcgtcag
agtgttatggagtatgaagagcatgaaaaccgagcgtggagtgttgatttctctcatatt
gatccttctatgcttgtgtccggcagtgatgattgcaaggtcaaagtttggtgcatgaac
caggaggcaagtgttattagcattgacttgaaagcaaacatttgctctgtgaagtacaat
cctcaatccagctttcatatagctgtgggttctgctgataatcatatccattattatgac
ttgagaaatattaagcagccgctgcatattttcagtggacaccataaaactgtttcatat
gtgaaatttttatccaacaatgagctggcttctgcatcaacggatggtacattgcgtttg
tgggatgtcaaggagaacattccactgcgaacttttggaggacatacaaatgagaagaac
tttgtgggtcttgcagtaaacagcgaatacattgcctgtggcagtgaaacaaatgaagtg
tttgtctatcaaaaggcgatttctaagccagtagcatcgcacatatttgattctgaccag
aatgatccagatgaggacatgggatcacatttcatcagttctgtttgttggaagcgcgag
agcccaaccattttaacagcaaatagtcaagggatcgtacaagtgcttgttcttactgct
tga
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