Nicotiana attenuata (coyote tobacco): 109243637
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Entry
109243637 CDS
T05870
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03013
Nucleocytoplasmic transport
nau03015
mRNA surveillance pathway
nau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109243637
09122 Translation
03013 Nucleocytoplasmic transport
109243637
03015 mRNA surveillance pathway
109243637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109243637
03041 Spliceosome [BR:
nau03041
]
109243637
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109243637
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
109243637
Spliceosome [BR:
nau03041
]
Complex C
Other components
EJC/TREX
109243637
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109243637
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
ApbA
Motif
Other DBs
NCBI-GeneID:
109243637
NCBI-ProteinID:
XP_019266139
UniProt:
A0A314L2I8
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGENKENDAYEEELLDYEEDDEKLPDPVTGKVNGESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKLHKELLKNECPHIVVGTPGRVLA
LAREKDLSLRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSETEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPAICIHSGMTQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagaacaaggagaacgatgcatatgaagaggagcttctcgactatgaagaagat
gatgaaaaactccctgatcccgtcaccggaaaagtcaacggcgagtccgccaaaaagggt
tatgttggtattcacagttcgggtttcagagattttcttcttaagccagagctattgcgg
gctattgtggactctgggtttgagcatccttccgaagtgcaacacgagtgtattccacaa
gctattctgggaatggatgttatttgccaagctaaatctggaatgggcaaaaccgctgtt
tttgttctttcaactctgcaacagattgaacctgttgctggtcaggttgctgccctggtt
ctatgtcacactagggaattagcttatcagatctgtcatgagtttgagaggttcagcaca
tatctgcccgatatcaaggttgctgttttctatggtggtgtcaacatcaaactccataag
gagctgctgaagaatgaatgtccgcatattgtcgttggaactcctggaagagtacttgca
ttggcaagagaaaaggacctgtctttgaggaatgtgaggcattttatactagatgaatgt
gacaagatgcttgaatcccttgacatgaggagagacgtgcaggagatcttcaaaatgacg
cctcatgacaagcaagtcatgatgttttctgcaactctcagcaaggagattcgcccggtt
tgcaagaaattcatgcaagatccaatggaaatttatgttgatgatgaggccaagttgacc
ctgcatggacttgtacagcactacatcaaattgagtgaaactgagaaaaaccgtaagctc
aatgacctgttggatgctttggacttcaaccaagttgttatttttgtcaagagcgtgagc
agagcagcagagttgaataagttacttgtggagtgtaattttccagctatctgcatccac
tctggcatgactcaggaagaaagattgacacgctacaagggtttcaaggaagggcacaag
agaattcttgtggcgactgatttggttgggagaggcatagacattgaaagggttaacatt
gtcattaactatgacatgccagattctgcagatacttaccttcacagagtgggaagagct
ggtagatttggaaccaaaggccttgccataacatttgtgtcctccgcatcagattctgat
gttctcaatcaggttcaggagaggtttgaagtggatattaaagaacttcctgagcagatt
gatacttctacatacatgccatcttag
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