Nicotiana attenuata (coyote tobacco): 109243650
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Entry
109243650 CDS
T05870
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03020
RNA polymerase
nau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109243650
09124 Replication and repair
03420 Nucleotide excision repair
109243650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nau03021
]
109243650
03400 DNA repair and recombination proteins [BR:
nau03400
]
109243650
Enzymes [BR:
nau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109243650
Transcription machinery [BR:
nau03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
109243650
DNA repair and recombination proteins [BR:
nau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
109243650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
109243650
NCBI-ProteinID:
XP_019266160
UniProt:
A0A1J6IY78
LinkDB
All DBs
Position
2:complement(6054624..6062532)
Genome browser
AA seq
1191 aa
AA seq
DB search
MDMEEEYEQQYNNDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPST
MFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGIGEY
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
AYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLV
AKGYIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPD
RASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTS
LRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMP
WTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALH
KCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAE
GRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFE
CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTKDVKQAKDQKKKGA
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggatatggaagaagagtacgaacaacaatacaataatgatgatgatgaagaggaaata
acccaagaggatgcttgggctgtaatcagtgcttacttcgaagagaaggggcttgtccga
cagcaactggattcgtttgatgagtttattcagaacactatgcaagaaattgtcgatgaa
tctgctgatattgagatccgacccgaatcccagcataaccctggtcaccaatctgacttt
gctgagacaatatacaaaatcaactttggccagatttatttgagtaagccaatgatgaca
gagtcagatggcgaaactgctaccttgtttccaaaggctgcaaggttgaggaatctgaca
tactctgcaccactgtatgtggatgttacaaagagagtcatcaagaaagggcatgatggt
gaagaagttactgaaactcaggacttcacaaaagtcttcatcggaaaggttcctataatg
cttcggtcaagttactgcacattatatcaaaattcagagaaagatctaacagagcttgga
gaatgtccattagatcaaggtgggtacttcattatcaatggaagtgaaaaggtcctaatt
gctcaggagaagatgagcaccaaccatgtgtatgtatttaagaagaggcaacccaacaag
tatgcgttcgttgcggaagtcaggtcaatggcagaatctcaaaaccgcccgccgagtacc
atgtttgtgcggatgctctcaagaactagcgcaaaagggggttcctctggccaatacatt
cgggcgacacttccatatatccggacagagatccctatcattatcgtgtttcgagctcta
ggttttgtggctgataaggatatattggaacatatttgttatgatttcaatgatactcaa
atgatggagttgttgcgtccttctttggaagaagcttttgttatacaaaaccaacaggtt
gctcttgactacatcgggaagagaggggctacagttggtgttacaagggaaaagaggata
aagtatgccaaagagattcttcagaaagaaatgcttcctcatgttgggattggagagtat
tgtgaaacaaagaaagcttattattttgggtatatcatccaccggcttctgttatgtgca
cttggccgaagggctgaggatgatagggatcactatggaaataagagactggatcttgct
ggtcctttgcttggtggcctgtttcgaatgctttttagaaagttgacgagggatgttaga
gcctatgttcagaagtgtgttgacaacggaaaagatgtaaaccttcaatttgcaatcaaa
gctaaaaccattaccagtgggctgaaatactctcttgctaccggaaactgggggcaagct
aatgcagcgggtacaagagctggtgtttcacaggtgttgaatcgtctgacttatgcttct
actttgtctcacttgcgaaggttgaactccccaataggacgagaagggaaactggccaaa
ccaaggcaattgcataattcacaatggggaatgatgtgtcctgcagaaactccagaaggt
caagcatgtgggctggtgaagaatttagccttaatggtttatataacagttggttcagcg
gcatatccaattctggagtttttggaagagtggggtactgagaactttgaggaaatttct
cctgccgttattccacaggctacaaagatctttgtcaatggtacctgggtgggaattcat
cgcgatcctgacatgttggtgagaacactgagacgacttaggagaagggttgatgtcaat
actgaggtcggggtagttcgtgatatccgtttgaaagaacttcgaatttataccgactat
gggaggtgcagtcgtccattatttattgtggaaaagcaaaggctgctgatcaagaagaag
gatattcaaacattgcaacaacgggagtcacctgaagagggtggctggcatgatctggtg
gctaagggatacatcgagtacattgacactgaagaagaagaaacaacaatgattagcatg
actataaatgatcttgtgcaagcacgccttaatcctgaggaagcttattctgatacctat
acccactgtgagattcacccgtcgctaatattgggtgtttgtgcatcaattattccgttt
cctgatcataatcagtctccccgtaatacttatcagtcagctatgggtaagcaagccatg
gggatttatgttaccaactaccaatttcggatggacacattggcctatgtgctttattat
cctcagaagcctcttgtcacaacacgggccatggaacacttgcatttcaggcaactgcct
gcgggcatcaatgcaattgttgccatttcctgctattctggatacaatcaggaggattct
gtcattatgaatcagtcatcgattgatcgtggatttttccgatcactatttttccgctca
tacagggatgaggaaaagaagatggggacattggtcaaggaggactttgggcgtcctgat
agagcttctactatgggtatgcggcatggttcttatgataagttggatgatgatggtctt
gcccctccaggaactagagtttctggtgaggatgtaatcattgggaagacaacccccatt
tctcaagatgatgcacaagggcaagcctctcgctatacaaggaaagatcacagtaccagt
ctccgccatagtgaaactggaatggtagatcaggttctattaacaacaaatgctgacggg
ctcagatttgttaaagtaagggttagatcagtccgcattcctcaaattggggacaagttt
agcagtaggcatggtcagaagggaacagttggcatgacgtatacacaagaagatatgcca
tggactgtggaaggcattactcctgatatcattgtgaatcctcatgctattccttctcga
atgactatcggtcagctgattgagtgtattatgggaaaggttgccgcacacatgggaaaa
gaaggggatgccactccctttacagatgttactgtggataacatcagcaaagctttgcat
aaatgtggataccagatgcgtggttttgagactatgtataatggtcacactgggcggcgg
cttagtgcaatgatattccttggtcccacgtactaccagcgactgaagcacatggttgat
gacaagattcattctagaggcagaggccctgtgcaaatcctcacaaggcagcctgcggaa
ggtcggtcacgtgatggtggtcttcgtttcggggaaatggagcgagattgtatgattgct
cacggtgctgctcattttctcaaagagcggttatttgaccaaagtgatgcatatagagtt
catgtttgtgagcgatgtgggctgattgctattgcaaacctcaagaagaattcttttgaa
tgcagaggctgcaagaacaagactgatattgtccaggtccacattccatatgcatgcaag
ttgcttttccaggagctaatggctatggctatagctccaagaatgcttacaaaggatgtt
aaacaagccaaagatcaaaagaaaaaaggagcttga
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integrated database retrieval system
