KEGG   Nicotiana attenuata (coyote tobacco): 109243695
Entry
109243695         CDS       T05870                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
nau  Nicotiana attenuata (coyote tobacco)
Pathway
nau03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:nau00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    109243695
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nau03021]
    109243695
Enzymes [BR:nau01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     109243695
Transcription machinery [BR:nau03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     109243695
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 109243695
NCBI-ProteinID: XP_019266211
LinkDB
Position
Unknown
AA seq 1215 aa
MTISDIMEDAGCSSGKGKISNGSAMTDFDIDDLFEVYDDDWDEDEDGDDNLDVDSVKELG
EGFLKNFCKKASTGFFEKYGLISHQINSYNDFINHGIQRLFDSVGEIHVEPGYDPLKRDD
GDWKHASVKFGKVTVERPKFWAGEKFSVDSEKEYLDLWPRHARLQNMTYSGRIMVETHVQ
VYTKKLVSSDKFKTGVERFVDKECEKEEKRDVLVGRIPVMVNSELCWMNDVDKPDCEFDH
GGYFIVKGAEKTFIAQEQICLKRLWLSNNSTWTVAYRAVDKMNRVYIKLTETLKLEHIKG
VEKALRVHFLAEMPIWVLFFALGVSSDREVVNLIDVDTEDTNIVNILVASIHNADKNCED
FRKGKNALAYVDTLIKGCKFPPQESVEECIKIYLFPNLSGLKQKARFLGYMVKRLLHSFI
GCRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMIKAMQRDLYGDRQVQPIEQYLD
ASIITNGLSRAFSTGHWCHAYKKMERVSGVVATLRRTNPLQMTADMRKMRQQVKYTGKVG
DARYPHPSHWGKVCFLSTSDGENCGLVKNLASLGLVSTSIVKPLLGTLFQCGMQQLVDDS
ATSLHGKQKVLLNGDWVGACEDSALFVSKLRRKRRRNEVPHQVEVKRDEKQDEIRIFSDA
GRILRPLLVVSSLKKIKALKGGDYGFQRLLENGIIELIGPEEDEDCRTAWGVEYLLKADK
ENPPAKYTHCELDMSFLLGLXCGVIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNIRVD
TNTHQLYYPQRPLFRTMLSDSLGKPKNARNQKGMLQRPEYFNGQCAIVAVNVHLGYNQED
SLVMNRASLERGMFRSEHVRSYKAEVDNKEAIGKKPKVEDSVNFGKTQSKIGRVDSLDDD
GFPFIGANLQSGDIIIGKYAESGADHSVKLKHTERGMVQKVLLSANDEGKIFAVVSLRQV
RSPCLGDKFSSMHGQKGVLGFLESQENFPFTAQGIVPDIVINPHAFPSRQTPGQLLESAL
GKGIALGGGQKYATPFXTLSVDAIVEQLHGRGFSRWGNERVYNGRTGEMAQNLIFMGPTF
YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL
FTLSDSSQMHICGKCKNMANVIQRSVQGGKVRGPYCRFCESVEDIVKVDVPYGAKLLCQE
LFSVGISLKFDTEIC
NT seq 3648 nt   +upstreamnt  +downstreamnt
atgacaatttctgatatcatggaagacgcgggatgtagtagtggtaaagggaagatatca
aatggatcagcgatgacggattttgatattgatgatctctttgaagtatatgatgatgat
tgggatgaggatgaggatggcgatgataatcttgatgtggattcagtaaaagagttgggt
gaaggtttcttgaagaacttctgtaaaaaggcatcaactggattttttgagaagtatgga
ttaatcagtcaccagattaattcatataatgacttcatcaaccatggaatccaacggttg
ttcgactcagtcggggagatccacgtcgagccagggtatgatccattaaagagagatgat
ggtgattggaagcatgcttctgttaagtttgggaaagtaaccgttgagcggccaaagttt
tgggcaggggaaaagttttctgtggacagtgagaaagagtacctggacttgtggccacgg
catgctcgccttcagaacatgacctattctggcaggattatggtcgagactcatgttcag
gtgtatactaaaaaactagttagtagcgacaagttcaaaactggggtagaacggtttgtt
gacaaggagtgtgagaaggaagagaaaagggatgtcttggttgggagaatccctgtgatg
gtgaactcagagttgtgctggatgaatgatgttgacaagcctgattgtgagtttgatcac
gggggatacttcatagtcaaaggggctgaaaagaccttcattgcacaggagcagatctgt
ttaaaaagactctggctgtcaaacaattccacttggacggttgcatatcgcgcagttgat
aaaatgaatagagtctacattaaactgactgagaccttgaagcttgagcacattaaggga
gtagaaaaagccctcagagtgcacttcctggcggaaatgccaatttgggtcttgtttttt
gctctaggtgtatcctctgacagagaggtagtaaatttaattgatgtggatactgaagat
actaatatcgtcaatatactagtagcttcaatccacaatgctgataagaattgtgaggat
ttcaggaaggggaaaaatgctctcgcttatgttgatacacttataaagggttgtaaattt
ccacctcaagaatctgttgaggagtgcataaaaatatacctgttccctaatcttagtggc
ctcaagcagaaggctcgcttccttggctatatggtaaagcgcctcttgcactcattcatt
ggttgcagaaaggttgacaacagagatgattttcgaaacaagagattggagctggctggt
gagctccttgaacgagagcttagggcgcacattaaacatgccgagaggcgcatgatcaag
gctatgcaaagagatctttacggagatcgacaagtccaaccaattgagcaatatttggat
gcatccataattaccaatggtctctccagggctttttcaactggacactggtgtcacgct
tacaagaaaatggagagggtttctggcgttgttgctactcttagacgaaccaatccattg
cagatgacggctgatatgaggaaaatgcgtcagcaggttaaatacactgggaaggttggc
gatgctagatacccacatccttcacactggggaaaggtatgttttctgtctacctcagat
ggagaaaattgtggcttggtgaaaaatttggctagtttgggtcttgtcagcactagtatt
gtgaagccacttcttgggacattgttccagtgtgggatgcaacagttagtagatgatagt
gccacctcactccacggaaagcaaaaggtacttctaaatggggattgggttggagcatgt
gaagattctgcactctttgtttcaaagctaagacgcaagcgccgcaggaatgaagtgcca
caccaggtggaagttaagagagatgagaagcaggatgaaattcgcatattttctgatgcg
ggaaggattctgcgccctcttcttgttgtttcaagtctaaagaaaatcaaagctttgaaa
gggggagactatggcttccaacgtcttctggaaaatgggattattgagcttataggacct
gaagaagacgaagattgtcgaactgcatggggagttgaatacctcttaaaagcagataaa
gagaacccacccgctaagtatacccattgtgagttggacatgtctttcctattaggtttg
ngatgtggtgttatcccttttgcaaatcatgatcatgctaggagggtcctctatcagtct
gagaagcactctcaacaagcaattgggttttcaacagtgaatccaaacattagagttgat
acaaatacccatcaactgtattatcctcaaaggccacttttcaggacaatgttgtcagat
tcccttgggaagcccaaaaatgctcgtaaccagaaaggaatgcttcaacggcctgaatac
ttcaatggtcaatgtgctattgttgcagtaaatgttcaccttggctataaccaagaagat
tcattggttatgaatcgtgcgtcactggagcgtggaatgtttcgatcggagcatgttagg
agctacaaggctgaagtcgacaataaggaagctattggaaagaagccaaaggttgaagat
tctgttaactttgggaaaacccagagtaaaattggacgagtggacagcctagatgatgat
ggttttccattcattggggcaaatctccagagcggggatatcataattgggaaatacgca
gaatcaggggctgatcacagtgtcaagctgaagcataccgagaggggtatggttcagaag
gttctgctctctgccaatgatgaagggaaaatttttgctgttgtatctctgagacaagtt
cgttctccatgtcttggagacaagttctccagcatgcacggacaaaagggtgtccttgga
tttctggaatctcaagagaactttccttttacagctcaagggattgttccagacattgta
atcaatccccatgcatttccttcaaggcaaacccctggtcagctgcttgaatccgctttg
ggaaagggtattgccctaggtggtggtcagaaatatgccactccctttntcactttatca
gttgatgccatagtcgagcagcttcatgggcgaggtttctcgagatggggaaatgagaga
gtttacaatggccggacgggtgaaatggctcaaaacctgattttcatgggcccaacattc
taccagcgccttatccatatggctgaagacaaagtgaaattccgtaatactggaccagtc
catccccttactcgccaacctgtggcagacagaaaacgcttcggtggaattaaatttggt
gaaatggagcgtgactgtcttatagctcatggtgctgcagcgaatttgcatgaacgcctt
ttcacacttagtgactcctcccagatgcacatatgtgggaaatgcaagaatatggcaaat
gtaatccagaggtccgtgcaaggtggtaaggtaaggggcccttattgccgcttctgtgaa
tcagttgaagatatagtcaaggttgatgtgccatatggtgcaaagttattatgccaggag
ctcttcagcgtgggcatatctcttaagtttgacactgagatttgctag

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