Nicotiana attenuata (coyote tobacco): 109243882
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Entry
109243882 CDS
T05870
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
nau
Nicotiana attenuata (coyote tobacco)
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109243882
03036 Chromosome and associated proteins [BR:
nau03036
]
109243882
Enzymes [BR:
nau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
109243882
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109243882
Chromosome and associated proteins [BR:
nau03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
109243882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
ResIII
AAA_19
UvrD-helicase
AAA_22
AAA_16
DEAD
SLFN-g3_helicase
Helicase_RecD
Mov-10_helical
ATPase_2
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
109243882
NCBI-ProteinID:
XP_019266435
UniProt:
A0A314L072
LinkDB
All DBs
Position
Unknown
AA seq
970 aa
AA seq
DB search
MGSVADKSDDEYSIITDKGDIGFVDFDRYKSACSYNPNGESEIVVISVPFPLIGGKPKSG
IVGETIVDSITIENTTNDSLELWSIKIYDSKPEDSFTLSLMKPPTPCSDMQYVQEFMESF
SLEDRMLRPGQTLTVWLSCKPKEIGLHTSAVHINVGDETIERLVFVLAEDKVSQSLASSR
PYYRDRKKKAPAVDVFAPNAFVVGSRPTRARNQGFRYRLPSYPIPGDIREMIEKEQFPDV
IGEGLRRDNYIVYFRILLNIEEIKMEEDMRDYDMESATMKRRGPQFLSLDVPGLAERRPS
LVYGDYIFARLATADASETTPYQGYIHRVEAEEVYLKFDKEFHINHVAGNLYNVQFAFNR
TSVRRLHQVIEATESLNGEILFPSGISRARHIQAARLAPISCMLNKEQTTAVEKILGCKG
GAPYVIHGPPGTGKTRTLIEAILQLHITRKNARVLVCAPSNSAADHILEKLVSQQNVEVK
DHEILRLNALTRPLDDVNPSHIRFCNVEVDAFKCPLLRDLRRYRIIISTYASASLLYAEG
IKRGHFSHIFLDEAGQASEPETMVPLSHLLRNETVVVLAGDPLQLGPIVFSKDAENYGLG
TSYMERLFECQLYGDLNENYATRLVRNYRCHPAILQLPSEMFYGGELIACKEDDKASAQT
WVDLLPNKEFPLLFIGIQGCDEREGNNPSWFNRIEASKVVEIIRDLIENKGLKEEDIGVI
TPYRQQVLKIRKALESFDWANVKVGSVEQFQGQEREVIIISTVRSTVTHNDFDRIHYLGF
LSNPRRFNVAATRARSLLVVIGNPHIICKDPYWNKLLWYCADNGSYKGCFLPERLEILEE
DSGQANNWCDDGAQENNWDCEGAQAKSWDCEGAQAKSWNCEGAQANNWEGAQAKSWDCEG
AQANDWDYEGAQANNWDYDQAKNWNDGGSCENVEKQNLQPSPEVQCDIAHQSEYIPDPVM
DEAEWSDGWK
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgggctcagttgctgataagtcggatgatgaatattcaataattactgataaaggagac
atcggatttgttgactttgacagatataaatcagcttgtagctacaatccaaatggagag
agcgagatagttgttatatctgttccatttccactgatcgggggaaaacctaaatcagga
attgttggtgaaactattgtcgattcaatcacaatagagaataccactaatgattcgctg
gaactctggtcaattaagatttatgactcgaaacctgaggattcgttcactctatctctg
atgaaaccaccaactccatgttccgacatgcaatatgttcaagaattcatggagtccttt
agcttagaggatagaatgctacgaccaggtcagacactaacagtgtggttgtcttgtaaa
ccgaaagaaattgggttgcacacatcagctgtgcatatcaatgttggcgatgagaccata
gaaagattggtttttgtcctggctgaggataaggtctcgcagtcactggcttcgagcagg
ccatactacagagacagaaagaagaaagcaccagcagtagatgtttttgctcctaatgca
ttcgttgtgggttctcgtcctacaagggctcgaaatcaaggattcagatacagacttcct
tcatatcccattcctggggatataagggaaatgatagagaaggaacagtttcctgatgtt
attggggaaggtctaagaagagataattacattgtttattttagaattttactaaatatt
gaagaaatcaagatggaggaagacatgagggactatgatatggagtccgccaccatgaag
cgaaggggacctcaatttttgtcccttgatgtcccagggctagctgagaggaggccgtca
cttgtttatggggattatatctttgcaaggctagctactgcagatgcaagtgagaccacc
ccttatcagggttatatccaccgagttgaggcggaagaagtgtatttgaagtttgataaa
gaattccacatcaaccatgttgctggaaatctttataatgtacagtttgcattcaatcgt
acaagtgtgcggaggttacaccaagtcattgaagctacagaaagcttaaatggagaaatt
ctctttccatcaggcatatccagagcgagacatatacaagctgccagactggcacctatt
tcatgtatgcttaacaaggagcagacgacggcagttgaaaagatccttgggtgcaaaggc
ggagctccatacgttatccatgggcctcctggtacaggcaaaacaaggactcttatagaa
gctattctccagctacacattacgaggaaaaatgctcgagttctcgtctgcgcaccttcg
aatagtgccgcagaccatatacttgagaaacttgtcagtcagcagaatgttgaagtgaag
gaccatgagattcttaggttgaatgcactcacacgtcctctagacgacgtgaatcctagt
cacattcgcttttgcaatgttgaagttgatgccttcaagtgtcctcttctcagggacctt
agaagatataggattattatatctacatatgctagtgcatctcttctttatgctgaaggt
attaaacggggacatttctctcacattttcttggatgaggcaggacaggcatcggagcct
gaaaccatggttcctctgtcgcatcttttaaggaacgagacagtagttgtacttgctggt
gatccactgcaacttggtcccatagttttttcaaaagatgctgaaaattatgggttgggg
acgtcatatatggaaaggttatttgaatgccagttatatggtgatctcaacgaaaattat
gctaccagactagtaagaaactatcggtgtcatccagcaattctgcagcttccctcagaa
atgttttatggaggagagttgatcgcatgtaaagaagatgataaagcttctgctcagact
tgggtggacctgcttccaaacaaggaatttccgttgcttttcatcggtatccaaggttgt
gatgaaagggaaggaaacaacccatcatggttcaataggattgaggcaagcaaggtagta
gagatcataagggatctgatagagaacaaaggtctgaaagaggaagatattggggtgata
acaccttacagacaacaagtactgaaaatacgaaaagcccttgagagtttcgattgggct
aatgtaaaggtcggtagtgttgagcaattccaaggtcaggagagagaagttattattatc
tcgaccgtccgatcaactgtaacacacaatgattttgatagaatccactatttaggattt
ttaagcaatccgagaaggtttaatgttgctgctacaagagccagatcgttgcttgtagtt
attgggaatccacatatcatctgcaaggacccctactggaacaagcttttatggtattgt
gcagataatggctcgtataagggctgcttcttacctgaaagactggagatccttgaagag
gattctggacaagcaaataattggtgtgatgacggggctcaagaaaataactgggactgt
gaaggagcacaagcaaaaagttgggactgcgaaggagcacaagctaaaagttggaactgc
gaaggggcacaagctaacaattgggaaggagcacaagctaaaagttgggattgcgaaggg
gcacaagctaacgattgggactatgaaggggctcaagctaacaattgggattatgaccaa
gccaagaattggaacgacggaggctcctgcgaaaatgtagagaaacagaatcttcagcca
tctcctgaggttcaatgtgatatagctcaccagtcagaatacatcccagaccctgttatg
gatgaagctgaatggtctgatggctggaaataa
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integrated database retrieval system
