Nicotiana attenuata (coyote tobacco): 109244660
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Entry
109244660 CDS
T05870
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
nau
Nicotiana attenuata (coyote tobacco)
Pathway
nau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109244660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nau03019
]
109244660
Messenger RNA biogenesis [BR:
nau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109244660
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109244660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
109244660
NCBI-ProteinID:
XP_019267335
UniProt:
A0A314KZ60
LinkDB
All DBs
Position
Unknown
AA seq
662 aa
AA seq
DB search
MSGLLNSSLNGSASNLPDNTGRSFPSSFSPQSGAPSPLYHHSGSIQGLHNIHGSFNVPNM
HGTLGSRNTAINNVPSSGVQQSGNNLSGGRFVPNNLPTALSQISQGNSHGHSGMTSRGGM
SVVGNPGYSSNTNGVGGSIPGILPTSAAIGNRSSVPGLGVSPILGNAGPRMTNSVGNIVG
GGNIGRSISSGAGLSVPGLASRLNMNTNSGSGNLNVQGPNRLMSGVLQQASPQVLSMLGN
SYPAGGPLSQNHVQAIGNFNSMGLLNDVNSNDGSPFDINDFPQLSSRPSSAGGPQGQLGS
LRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNADYAMDPHQKEQLHDNTLSMMQQQHFS
MGRSAGFNLGGTYSSNRPQQQLQHAPSVSSSGVSFSNINNQDLLSLHGSDVFQSSHSSYQ
QQGGGPPGIGLRPLNSSGTVSGIGSYDQLIQQYQQHQGQSQFRLQQMSTLGQPFRDQSLK
SMQSQVAPDPFGMLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSAENLYKTFGSPWSDE
PAKGDPEFTVPQCYYAKQPPPLNQAYFSKFQLDTLFYIFYSMPKDEAQLYAANELYNRGW
FYHREHRLWFMRVANMEPLVKTNAYERGSYICFDPNTWETIRKDNFVLHYEMLEKRPVLP
QH
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggttactcaattcttctctgaacggatcagcttcaaatcttcctgataacacc
ggtcgctcatttccttcctctttctctcctcaatcgggtgcaccctcccctctttatcat
cactcaggaagtatccaggggctgcataacattcatgggagtttcaacgttccaaacatg
catggaacacttggttcaagaaacacagcaataaataacgtcccctccagtggtgtccag
caatctgggaataatctttctggtggtcgttttgtaccaaacaatcttcccactgccctt
tctcagatatcccaaggtaattcgcatggtcattctgggatgacgagtagaggtggtatg
agtgttgttggtaacccgggatatagcagtaacactaatggtgtagggggttctatccct
ggaattctcccaacctctgcagcaattggtaatcgaagttctgtgccaggccttggggtg
tcccccattttgggaaatgcaggcccaaggatgacaaactcagttggaaatatagttggt
gggggcaacattggcagaagcattagctctggtgcaggattgtctgtgcctggtcttgct
tcacggctaaatatgaacaccaactctggctctggaaatttaaatgttcaaggacctaat
aggctaatgagtggtgttcttcagcaagcctctccgcaggttctttctatgttagggaac
tcctaccctgctggtggcccactgtctcaaaaccacgtccaagcaattggcaattttaac
tctatgggattgttgaatgacgtaaattcaaatgatggatctccttttgatatcaatgat
ttccctcagctaagcagccggcccagttcggctggaggacctcaaggacaattgggttcc
ttacggaagcaagggctcagtcctattgttcaacaaaatcaggaattcagcattcaaaat
gaagattttcctgctttacctggatttaaaggtgggaatgctgattatgctatggatcct
caccagaaagagcaactccatgataatactctttcgatgatgcagcagcaacacttctca
atgggaagatctgctggttttaacttggggggaacatactcatcgaatcgtccacagcag
cagctgcaacatgctccatctgttagtagtagtggtgtctccttttcaaatataaataac
caggatctgctgagtttacatggttcagatgtcttccaatcatcgcactccagttaccag
caacagggtggtggacctcctggtattgggttacgacctcttaactcttcaggtactgtt
tctgggattggatcatatgatcagcttatccagcagtaccaacagcatcagggtcaatcc
caatttcgcttgcagcaaatgtccactttaggtcagccattcagggatcagagcttaaag
tccatgcaatcccaagttgctcctgacccgtttggtatgcttggtttgctaagtgtaata
cggatgagcgatccggatttgacttctcttgcacttggaattgatctaacaacacttgga
ttaaatttgaactctgctgaaaatttgtacaagacatttggttccccatggtctgatgag
cctgctaagggggatccagagtttacagtaccccaatgttattatgcgaagcaaccgcca
cctttaaatcaagcgtacttctcaaagtttcagctagatactttgttctacattttttac
agcatgccaaaagatgaagcacagctatatgctgcaaatgaactgtacaaccgcggctgg
ttctatcacagagaacatcggttgtggtttatgcgggttgccaacatggagcctctcgtc
aagacgaatgcatatgagagagggtcttacatttgttttgatccaaacacatgggagacg
atccgcaaggataattttgtgctccactatgaaatgttggaaaaaagacctgttctgcct
caacactaa
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