Neisseria arctica: LVJ86_04990
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Entry
LVJ86_04990 CDS
T08172
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
naw
Neisseria arctica
Pathway
naw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
naw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LVJ86_04990 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
naw03400
]
LVJ86_04990 (mfd)
Enzymes [BR:
naw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LVJ86_04990 (mfd)
DNA repair and recombination proteins [BR:
naw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LVJ86_04990 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
Glyco_tran_WecG
HemY_N
Motif
Other DBs
NCBI-ProteinID:
UOO87605
LinkDB
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Position
complement(1099603..1102992)
Genome browser
AA seq
1129 aa
AA seq
DB search
MNYTVPAPAQKTFWPGLSRGSLPLYLTQNLPAKPLKIILTQDTEQALRLQAAWRFFKPHD
ICVFLPDWETLPYERFSPHQDLVSERLAALWQLKNGQADVLFVPVATAMQKLAPASFMSA
RTFWLKTGQTLDINALRENLVEAGYNSVSNVVASGEFAVRGGIVDLFPMGSEMPYRLDLF
DDEIDSIKTFDPDSQRTIAPVSEIRLLPAHEFPTDHEAQKIFRTRFREEIEGDPSEAAVY
KSVSKGHFGAGVEYYLPLFFEQECANLFDYAGEEAIVVCIGDVHAAAARFWKDVKTRFTM
AQGDETYPPLHPRHLYLSDNEFSSRLKTYPQIQPDIDSPTHTLPNVAVNRQADMPLEALK
DFQARFDGRILLCAESLGRRETMLGFTQQHNLKIKPIADWQSFLSDSAKLMLTVAPLSFG
FCLPDKKIAVITESDLYQYVARSNHRRRKHTAVSDGLLRDLAEINIGDPVVHEDHGIGRY
MGLVNMDLGEGNSEMMLLEYADEAQLYVPVSQLHLISRYAGHAAESVQLHKLGSGSWSKA
KRKAAEKARDTAAELLNLYAQRAAQEGHKFELNEVDYQAFADGFGYEETEDQAAAIAAVL
KDLTQGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRF
ADFPVKVAQLSRFNTSKATKETLQGMADGTVDIVIGTHKLVQPDIEFKNLGLVIIDEEHR
FGVRQKEQLKRLRANVDILTLTATPIPRTLSMALDGLRDFSLITTAPSRRLAVKTFVKPF
SEATVREAVLRELKRGGQVFFLHNEVDTIENMHERLAELLPEARIGVAHGQLRERELEQV
MRDFLQQRFNILLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAY
LLTPEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMMQVGFTLY
TEMLKQAVRDLRKGRVPDLDAPLGVTTDIKLHSPALLPESYCPDIHERLVLYKRLAACDN
QACINTIHEELVDRFGLPEQPVKTLLESHRLRLESKALGIDAIDANSDALTLTFGKNHTI
DPTEIILLIQNNKNYRLAGQDKLRVEAVMDNIDTRIQTVKTVLKKLQGK
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgaattacaccgttcccgctcccgcacaaaaaaccttctggcccggcctttcccgcggc
agcctgcccctatatctcacacaaaacttaccggccaaaccattaaaaatcattcttacc
caagatacggagcaggctttgcggctccaagcggcatggcgtttcttcaaaccccatgat
atatgcgtattcttacccgactgggaaacccttccttacgaacgcttttcaccgcaccaa
gatttggtttcggaaaggttggcggcattatggcagttgaaaaacggtcaagccgatgtt
ttatttgtaccggttgccaccgccatgcagaaacttgctcccgcatcgtttatgagcgcg
cgcaccttttggctgaaaaccggacaaacactcgatatcaacgccttgcgtgaaaatttg
gtcgaagcaggttacaacagtgtgagcaatgtggttgcaagcggcgaatttgccgtacgc
ggcggtatagtcgacctgtttccaatgggcagcgaaatgccctaccgcttggatttgttt
gatgatgaaatcgacagcatcaaaactttcgaccccgacagccagcgcaccattgccccc
gtcagcgaaatccgcctgttgcccgcccacgaattccccaccgatcacgaagcacaaaaa
atcttccgtacccgtttccgcgaagaaatcgaaggcgacccttcggaagcagcggtttat
aaaagtgtcagcaaaggccattttggtgcgggcgtcgaatactacctgccgctttttttc
gaacaagagtgtgccaacctgtttgattatgcgggagaagaagccattgttgtttgtatc
ggcgatgtacatgcggcagccgcacggttttggaaagatgtaaaaacacggtttaccatg
gcacaaggcgacgaaacctatccgcctttgcatccacggcatttgtatctcagtgataac
gagttttccagccgtctgaaaacctaccctcaaatccaacccgatatcgacagccctacc
catactctgcccaacgtcgcggtaaaccgccaggcagatatgcctcttgaagctttaaaa
gattttcaagccagattcgacggccgtattctcttatgtgccgaaagccttgggcgacgg
gaaaccatgcttggttttacgcagcagcacaatctgaaaatcaaaccgattgccgattgg
caaagctttctgtccgatagcgccaaactgatgctcaccgttgccccgctgtctttcggt
ttctgtttgcccgataaaaagatagcggtgattaccgaatccgatctatatcaatatgta
gcgcgcagcaatcaccggcgccgaaaacacaccgccgtttcagacggccttttacgtgac
ctggccgagatcaatatcggcgaccccgttgtacacgaagatcacggcattggccgctac
atgggcttagtcaatatggatttgggagaaggcaacagtgaaatgatgttgctggaatat
gccgatgaagcacaattgtatgtacccgtatcccagcttcatctgatcagccgttatgcc
ggacatgcagccgaaagcgtacaactgcacaaactgggcagcggcagttggagtaaagcc
aaacgcaaagctgccgaaaaagcccgcgatacagcggccgaactgctcaacctttatgca
caaagagccgcgcaagagggtcataaattcgaactgaatgaagtcgattaccaagccttt
gcagacggcttcggttatgaagaaaccgaagaccaggccgcggccatcgccgccgtattg
aaagaccttacccaaggcaaaccgatggacaggctggtgtgcggagatgtcggctttggt
aaaaccgaagtggcactgcgcgccgcttttgttgccgtgatgggagggaaacaagtggcc
gtgctcgcccccaccacgctactcgtcgaacaacacgcgcaaaattttgccgaccgcttt
gccgattttccagtaaaagtcgcccaactatcccgtttcaacacaagcaaagccaccaaa
gaaaccttgcaaggcatggccgatggaacagtcgacatcgttatcggcacccacaaactc
gttcagcccgatatcgaatttaaaaatctgggcttggttattattgacgaagagcaccgt
tttggcgtccgccaaaaagaacagctcaaacgcttgcgtgccaatgtcgacatacttacc
ctaactgccaccccgattccgcgcaccctcagtatggctttggacggcttgcgtgacttt
tccctgattaccaccgcacccagccgccgcctcgccgtcaaaacctttgtcaaacccttc
agcgaggccaccgtacgcgaagccgtattgcgcgaactcaaacgcggaggacaggttttc
ttcttgcacaatgaagtcgacaccatagagaacatgcacgagcgcctcgccgaactccta
cccgaagcccgcatcggcgttgctcacggacaattaagggaacgcgaactggaacaagtc
atgcgcgacttcctgcaacaacgtttcaatatcctgctctgttccaccattatcgaaaca
ggtatcgacatacccaatgccaacaccatcattattaaccgcgccgacaaattcggcctg
gcacagctacaccaattacgcggacgcgtaggacgcagccatcaccaggcttatgcctac
ctgctcacacccgaatacatcaccaaagacgccgaaaaacgcttagatgccattgctgct
gccgacgaactcggagccggatttaccctagccatgcaagacctcgaaattaggggtgcc
ggcgaaattctcggcgaagggcaaagcggtgaaatgatgcaagttggctttaccctatac
accgaaatgctcaaacaagccgtgcgtgatcttagaaaaggccgcgtacctgatttggac
gctcctctcggcgtaaccaccgacatcaaactgcatagccccgcactactgcccgaaagc
tactgtccggacatccatgaacgcctcgtactctacaaacgcttggctgcttgtgataac
caagcctgtatcaacaccatacacgaagagcttgtcgaccgtttcggactccccgagcag
ccggttaaaaccctactcgaaagccaccgcctgcgtctcgaatccaaagcactcggtatt
gatgccattgatgcaaacagcgatgccttaaccctcaccttcggcaaaaaccacactatt
gatcctacggaaatcatcctactgatccaaaacaataaaaactaccgtcttgccgggcaa
gacaaactacgggtagaagcagtcatggacaatattgatacacgcatccaaaccgtaaaa
accgttttgaagaaactgcaaggaaaataa
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