Aquisalimonas sp. 2447: HC341_09335
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Entry
HC341_09335 CDS
T06517
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
nax
Aquisalimonas sp. 2447
Pathway
nax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HC341_09335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nax03019
]
HC341_09335
Enzymes [BR:
nax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HC341_09335
Messenger RNA biogenesis [BR:
nax03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HC341_09335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QIT55391
LinkDB
All DBs
Position
complement(1979636..1980913)
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AA seq
425 aa
AA seq
DB search
MENDHMTDVTFKSLALTPSLQDSIDETSFTHCTPIQAATLPLALQGRDVAGQAQTGTGKS
AAFLLATMHYLMETPVEEGKRGPWSMILAPTRELALQIHKDAEQLGRFTGLKCVAVYGGT
GYESQRKALENEADIIIGTPGRIIDFYKQKVFSLKNIEVVVLDEADRMFDLGFIDDIRYL
LRKMPPPDKRINMLYSATLSHRVMELAYEHMNDPEIVRIESEYVTAENVTQKLFHVPKED
KIKLLLGLFRQHTPERTIVFVNTKRAADQVVGYLRGNDYDAEVISGDIPQTKREKLLKRF
QTGELPILVATDVAARGLHIPAVSHVINFDLPQEAEDYVHRIGRTARAGASGDAMSLACD
QYVYSLPDIEKYIDQKIPSEVVTDDMLVDPKPPKMPKRPPSNRGGPKGKPGAGNRGPRRS
QASGS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgaccacatgaccgacgtaaccttcaagtccctggcgctcacgccgagcctg
caggacagtatcgacgaaacatccttcacccactgcacgcccatccaggccgccaccctg
ccgctcgccctgcaggggcgcgacgtggccggccaggcgcagaccggcaccggcaagtct
gccgccttcctgctggcaaccatgcactacctcatggaaacgccggtggaagaaggcaag
cgcgggccgtggtccatgatcctggcgcccacccgggaactggcgttgcagatccacaag
gacgccgaacagctcggccgcttcaccggcctgaaatgcgtcgccgtctacggcggcacc
gggtacgagagccagcgcaaggccctggagaacgaagccgacattatcatcggcacgccg
ggccgcatcatcgacttctacaagcagaaagtgttcagcctgaagaacatcgaagtcgtg
gtgctggacgaggccgaccgcatgttcgacctcggtttcatcgacgacatacgctacctg
ctgcggaagatgcccccgccggacaagcgcatcaacatgctctattcggccaccctctcc
caccgggtgatggaactggcctacgagcacatgaacgatcccgagatcgtgcgcatcgag
agcgagtacgtcaccgccgagaacgtcacccagaagctcttccacgtgcccaaggaagac
aagatcaagctgctgctggggctgttccggcagcacacccccgagcgcaccatcgtcttc
gtcaacaccaagcgcgccgccgaccaggtggtgggctatctgcgcggcaatgactacgac
gccgaggtcatctccggtgacatcccgcagaccaagcgggagaagctgctgaagcgcttc
cagacaggtgaactgccgattctggtcgcgacagatgttgcagcccgcggtctgcacatt
ccggcggtgagtcatgtcatcaactttgacctgccccaggaagccgaggactacgtccac
cggatcggccgcacggcgcgcgccggcgccagcggtgacgccatgtccctggcctgcgac
cagtacgtctactcgttgccggacatcgaaaagtacatcgatcagaagatcccgtcggag
gtggtcaccgacgacatgctggtggaccccaagccgccgaagatgcccaagcgcccaccc
agcaaccggggcggaccaaaaggcaaacccggcgccggcaatcgcggaccgcggcgcagc
caggccagtggcagctaa
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