'Nostoc azollae' 0708: Aazo_0442
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Entry
Aazo_0442 CDS
T01260
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
naz
'Nostoc azollae' 0708
Pathway
naz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
naz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aazo_0442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
naz03019
]
Aazo_0442
03009 Ribosome biogenesis [BR:
naz03009
]
Aazo_0442
Enzymes [BR:
naz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Aazo_0442
Messenger RNA biogenesis [BR:
naz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Aazo_0442
Ribosome biogenesis [BR:
naz03009
]
Prokaryotic type
rRNA helicases
Aazo_0442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Cas3-like_C_2
ADAMTSL1
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ADI62983
UniProt:
D7E074
LinkDB
All DBs
Position
complement(453334..454875)
Genome browser
AA seq
513 aa
AA seq
DB search
MNLTFQELGISQERVEILEKLSFTTPTNIQTQAIPQLLAGRDVVGQSQTGTGKTAAFSLP
MLEKLDVSKKAVQAVVLTPTRELAMQVHDAISQFMGNDGLRVLAIYGGQSIDRQMMQLKR
GVHVVVGTPGRVIDLLERGSLKLDQVKWFVLDEADEMLSMGFIDDVIRILSQAPTERQTA
LFSATMPPSIRQLVNKFLNSPVTVTVEQPKAAPNKINQVAYLIPRHWTKAKALQPILEME
DPETALIFVRTRRTAAELTNQLQAAGHSVDEYHGDLSQQARERLLTRFRNRQVRWVVATD
IAARGLDVDLLSHVINFDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFERRKQQAFERH
NRQNWQVLTIPTRAQIEARHIKKLQEQVAEALTGERLASFLPIISELIEKYDAQAIAAAA
LQIAYDQTRPDWLQSGVDIPQEEPSPKPKLNKHRDSGEYPRSGGGERERSRSSWSKSDNG
GDEGRGTPKPRLRTTTQRESSVTPSQKLGSHRE
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttacctttcaagaactaggcatttcccaagagcgtgttgaaattctagaaaaa
cttagctttaccacacctacaaatattcagactcaagctattccgcaactattagcgggt
cgtgatgtagttgggcaatcgcaaacaggaacaggtaaaacagcagccttttcactgccg
atgttagaaaagctggatgtcagcaaaaaagctgtacaagctgttgtactaacacctact
cgtgaattggcaatgcaagttcatgatgctatttcccaattcatggggaatgatggatta
cgagtattagcaatctacggtggtcagtcaatcgaccgtcaaatgatgcagctaaaacgc
ggtgttcatgtagttgtgggtacaccaggacgggtgatagatttgctagagcgtggtagc
ttaaagctggatcaagtgaaatggtttgtccttgatgaagctgatgaaatgttgagcatg
ggctttattgatgatgtaatcagaattctgtcccaagctcccacagagcgccaaacggct
ttattttcggcaactatgcccccatccattcgccaattggtgaataagtttttaaactct
ccggtgaccgtaaccgttgagcaaccaaaagctgcacccaataaaatcaatcaggtagct
tacttgattcctcgccattggacaaaggctaaagctttacagccaattctggaaatggaa
gatccagaaacagctttaatctttgttcgcaccagacggacagccgcagaactaaccaat
caattgcaagctgctggccatagtgtggatgaatatcatggtgatttgtctcagcaagca
cgggaaagattattaacccgtttccgcaatcgtcaagtccgctgggtggtagctactgat
attgctgcacggggtttagatgtggatctactttcccacgtgattaactttgacttaccc
gatagcgtggaaacctacgttcaccggattggtcggactggtcgtgctggtaaagaagga
actgcgatttctttggtacaaccatttgaacgccgcaaacaacaggcatttgaacgccat
aaccgccaaaattggcaggtgttaacaattcctaccagggcgcaaattgaagctagacac
atcaaaaaattgcaagaacaggtagcagaagctttaactggtgaacgtttggcttcattt
ttaccaatcatcagtgagttgattgaaaaatatgatgctcaggcgatcgcagctgcggct
ttgcaaatcgcctatgatcaaacccgtcccgactggttgcaatctggtgtagatattccc
caagaagaaccatctcccaaacccaaactcaacaagcatcgtgatagtggcgaataccca
cgcagcggtggtggtgaacgtgaacgtagccgttcctcttggtctaaatcagataacggt
ggtgatgaaggacggggaacaccaaaacccagattacggacaacaactcaacgtgaatct
tctgttacacccagccaaaaactaggttcacatagggaatag
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