'Nostoc azollae' 0708: Aazo_1800
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Entry
Aazo_1800 CDS
T01260
Name
(GenBank) VacB and RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
naz
'Nostoc azollae' 0708
Pathway
naz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
naz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aazo_1800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
naz03019
]
Aazo_1800
03016 Transfer RNA biogenesis [BR:
naz03016
]
Aazo_1800
Enzymes [BR:
naz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Aazo_1800
Messenger RNA biogenesis [BR:
naz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Aazo_1800
Transfer RNA biogenesis [BR:
naz03016
]
Prokaryotic type
tRNA degradation factors
Aazo_1800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
ADI63918
UniProt:
D7DVQ9
LinkDB
All DBs
Position
1868756..1871110
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AA seq
784 aa
AA seq
DB search
MEFSIATLLTNFTDDKLVARKVLEKKLGCEDEDSLEKLHIALEVLEKTGLLVKERGKYRR
VSEEGLIEAKLRCSSKGFCFAIQDVEGSEDIYIRESHLSNAWNGDRVLVRVLKEGSRRRS
PEGEVKLILERSNHTLLARIKQVEGGFRAVPLDDRLLFELKLLTNGMKLEEAIDHLAHVE
VLRYPLAQYPPLGQVVQILGSDAEAAADIDLVTCKHDLSRNFSENVLDTAAKLPKKLLKA
DLKDRVDLRNLFTLTIEGVNGDDRVIENAWSLEKNPSGPWRLIVHVTDLSHYIQADEILD
REALKRGRSVYLGELILPMLPDTVGERCSLMPGSDHLCLSFVITIDPQSGEVLEWEIQPS
VINVDQSISKQQAQAVLTGESTKASAESIEILHNLATLAKAAKQARLSRGSLQLNLPPSQ
NPYHDEGAMGAVVVNDSPVRSLITEYVLLVNELMGEHLSALGVPAIWRVQGTPDPEDVQE
MLKLAINLGVELTLDPDLEIQPLDYQHLTRAFTESPSEQVLTYLLQDTLKPSLYSTTKTP
HFGLALPQYLHFSSPLRRYPDLLMQRVYHALLEYGRDRRNTRVKERVNLRHSASHLEINW
NVLPPELQQELQSDLTRVLVQINDREKEVQEAEADLAGLQKAQLMKQRIGQVFPGVITGV
QSYGFFVEIEVPATELEIGSKLSTPLRVEGLVHVSSLKDDWYEYRARQQALFGRKNRASY
RLGDRVAVQVKSVDYYRQQIDLVTVGADGVAKDLGVGAGNQDTSDGYLEDHTDTLDLDLY
DEDE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcaatcgctacactccttaccaattttactgatgataaattggtagctcgg
aaggttttggaaaaaaaactgggttgtgaggatgaagacagtttagaaaaacttcacatt
gctttggaggtgctagaaaaaactgggctgttagtaaaagaacgtggtaaatatcgccgt
gtatcagaagaggggctaattgaagctaaactccgctgttctagcaagggcttttgcttt
gcaattcaggacgtggaaggctctgaggatatttacatccgggaaagtcatcttagtaat
gcctggaatggcgatcgcgttttggtcagagtactaaaagaaggtagtcgtcggcgttct
cctgaaggcgaagtgaagttgattctggagcgttccaatcacactttactcgcacggatt
aagcaagtggaagggggtttccgtgctgttcctttagatgatcgtctgctgtttgaattg
aaattgttaacaaacggcatgaaattagaagaagctatcgaccacctggctcatgtagaa
gttctgcgttatcctttagctcagtatccacctctcgggcaggttgtacaaatactgggt
agtgatgcagaagctgctgctgatatagatttggtaacttgtaaacacgatttatctcgg
aatttttcggaaaacgtattagatacagccgctaagttgcccaaaaagttactgaaagca
gatttgaaagatcgcgtagatttacgtaacttgtttactctgacgatagaaggggtaaac
ggtgatgatagggtcatagaaaatgcttggagcttggaaaaaaatcccagtggcccatgg
cggttgattgttcatgtcactgatttatctcactatattcaggctgatgaaatattagac
cgagaagcactcaaacgggggaggtcagtgtatctcggagaattaattttaccgatgtta
cctgatactgtgggagaacgttgttctttgatgccaggtagcgatcacctttgtctctct
tttgtgattactattgatccccaatcgggagaagtgttggaatgggaaattcaacccagt
gtcattaatgtagatcagtccatcagcaaacaacaagcacaagcagttctcacaggtgaa
tcaacaaaagcatctgcggaaagtatagagatattacataacctagccactttggctaaa
gcagctaaacaagctcggttgtctcgcggtagtttacaattgaacctaccacctagccaa
aatccttaccatgatgagggagcgatgggggctgtggtagtcaatgactcaccagtgcga
tcactcatcacagagtatgtactgttggttaatgaactgatgggagagcatctcagcgcc
ttgggagttcccgctatttggcgagtccaagggacacccgatcctgaagatgttcaggaa
atgctgaaattagccattaatttgggtgtggaactgacacttgatccagatttggaaatt
caacctctagattatcaacacttaactagagcttttacagaatcaccatcggaacaagtc
cttacctacttgttacaagatactctcaagccatctttatacagcaccaccaaaactccg
cactttggtttagctctgccacagtatcttcactttagttctcccttacggcgttatcca
gatttattaatgcaaagggtgtatcatgctctactggaatacgggcgcgatcgccgtaac
acccgtgtcaaagagcgtgttaacttgcgtcactcggcttcccatctggaaattaactgg
aatgttctccctccagaactccaacaagaactacaaagcgatttaaccagagtccttgtt
cagattaatgacagagaaaaagaagtccaagaagctgaagccgatttagccggactgcaa
aaagcccaactgatgaaacagcgaatcggtcaagtctttcccggtgtaattactggggtt
caatcctacggcttctttgtcgaaattgaagttccagccactgagttagaaatcggttcc
aagctgagtacaccattgcgagtagaaggactggttcacgtcagttccctcaaagatgat
tggtatgaataccgcgctagacaacaagctctttttggccgcaaaaatcgcgcctcctat
cgactaggcgatcgcgtagctgtacaagtcaaaagtgtagattactatcgccagcaaatt
gacttagtcacagttggtgctgatggtgtagccaaagacttaggagttggagcaggaaat
caagatacatccgatggttacttagaagatcacacagacactcttgatttagatttatac
gatgaggatgagtaa
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