'Nostoc azollae' 0708: Aazo_4404
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Entry
Aazo_4404 CDS
T01260
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
naz
'Nostoc azollae' 0708
Pathway
naz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
naz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Aazo_4404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
naz03400
]
Aazo_4404
Enzymes [BR:
naz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Aazo_4404
DNA repair and recombination proteins [BR:
naz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Aazo_4404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADI65719
UniProt:
D7DWQ6
LinkDB
All DBs
Position
4484284..4487784
Genome browser
AA seq
1166 aa
AA seq
DB search
MAFSSIVRALARSPLTAELITKLKKYQELRLNGISRLPKGLVASALANNEGRDLCVVCAT
LEEAGRVYAQMEAMGWKTVHFYPAAEASPYEPFDPETELSWGQMQVLADLVNGQWSVVSS
QLPNRNTAIIATVGALQPHLPPLEVFRSFCLSLKKGLEYDLDEFSEKITSLGYERVPLVE
TEGQWSRRGDIVDVFPVSSELPVRLEWFGDEIKQIREFDPATQRSALDKVEQIFLTPTSF
SGIVLAALKQSSEFRVLSADLNSDVDDLENLGLEGSRRFLGLAFAKPASLLDYLSANTLI
AIDEVEQCHAHSARWVENADSQWRLGTGEESQQVPKIHRTFNECLDEAGNFQKLYLSELA
EENSGTNLASRPLPVTPHQFAKLAEKIRQERDRKFAVWLISAQPSRSVSLLQEHDCPAQF
IPNPRDYQAIGKLQINHTPIALKYSGLAELEGFILPSFRLVIVTDREFYGQHSLADFGYV
RKRRKAISKQVDTNKLRPGDFVVHRSHGIGKFVELESLTINNETRDYLVIQYADGLLKVA
ADKVGSLSRFRTSGDQTPALHKMTGKAWDNTKNKVRKAIKKLAVDLLKLYAARSQQQGFA
YPADMPWQEEMEDSFPYQATTDQLKAVQDVKRDMESERPMDRLVCGDVGFGKTEVAIRAI
FKAVTAGKQVAVLAPTTILTQQHYHTIKERFSPYPVNVGLLNRFRSAEEKRNIQKRLATG
ELDIVVGTHQLLGKGVQFRDLGLLVIDEEQRFGVNQKEKIKSLKTQVDVLTLSATPIPRT
LYMSLSGIREMSLITTPPPTRRPIQTHLAPLNPEIVRSAIRQELDRGGQVFYVVPRVEGI
EETTANLREMIPGGRFAIAHGQMEESELESTMLTFGNNDADILVCTTIIESGLDIPRVNT
ILIEDAHRFGLAQLYQLRGRVGRAGIQAHAWLFYHKQRELSDAARLRLRAIQEFTQLGSG
YQLAMRDMEIRGVGNLLGAEQSGQMDAIGFDLYMEMLEEAIREIRGQEIPKVDDTQIDLN
LTAFIPSTYITDIDQKMSAYRAVATAKSKEELKSIAAEWTDRYGTIPVPANQLLRVMELK
QLARNIGFSRIKPENKQHIVLETPMEEPAWNLLAENLTETMRNRFVYSSGKVTARGLGVL
KAEQQLQTLIDAFGKMQGAIPEAVLV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggccttttcttctattgtgcgtgccttggcgcgatcacctctcaccgccgaactaatt
accaaactcaaaaagtaccaagaattgcggttaaatggcatttcccgtttacccaagggt
ctggtagcttcagctttagccaacaatgagggtagggatttgtgcgtggtctgtgccact
ctcgaagaagccggacgggtttatgcccaaatggaagcgatgggatggaaaactgtgcat
ttttaccctgccgcagaagcttctccctatgaaccttttgacccggaaactgagttaagt
tggggacaaatgcaggttttagccgatttggtcaatggtcaatggtcagtcgtcagtagt
cagttacctaataggaatacggccattattgctactgtaggcgcattacaaccgcattta
ccacctctagaggtatttagatctttttgtctgtccttaaaaaagggtctggaatacgat
ttagatgagttcagtgaaaaaatcaccagtttgggctatgaacgggtgccgttggtggaa
acggaaggacaatggagtagacggggagatattgtggatgtgtttcctgtttcctcggag
ttaccagtgcggttggaatggtttggggatgaaatcaaacaaattcgggaatttgatccc
gccactcaacgttctgctttagataaagttgaacaaatatttcttaccccaacaagtttt
tcagggattgttttggcagcactcaaacagagttctgagtttcgtgtgttgagtgctgac
ttaaattctgatgtagatgatttggaaaatttaggactggagggaagcaggcgttttcta
gggttagcttttgccaaacccgcttcacttttagattatttatcagcaaatacccttatt
gccattgatgaggtagaacagtgtcatgcccatagcgctcgctgggtggaaaatgcggat
agtcagtggagacttgggactggggaagaatctcagcaagttcccaaaattcatcggact
tttaatgagtgtttagatgaagctggaaattttcaaaagttatatttatcagaattagcg
gaagaaaacagcggtactaatttagctagtagacctttacctgtaacacctcaccagttt
gccaagttagctgagaaaattagacaggaacgcgatcgcaagtttgcagtttggctaatt
tctgctcaaccttcccgttctgtttctctactccaagaacatgattgtcctgcccagttt
atccctaatccccgtgattatcaagcgattggtaaactacaaataaatcatacgcctatt
gcactcaaatattctggtttagcagaattagaaggtttcattttaccttctttccgtctt
gttattgttaccgatcgcgaattttatggacaacattccttagcggattttggttatgtc
cgcaaacgtcgcaaagctatatctaaacaagttgataccaataaattacgaccaggagat
tttgttgttcatcgtagtcacggcattggtaaatttgtcgaactagaaagtttaacaatt
aataatgaaacccgtgattatttagttattcaatatgccgatggtttgttgaaagttgct
gctgataaagttggttctctatctcggtttagaaccagtggagatcaaacacccgcacta
cataaaatgacgggtaaagcttgggataataccaagaataaagtccgtaaggcgattaag
aaattagcagtagatttgttaaagttgtatgctgcgcgatcgcaacaacaagggtttgct
tatcccgcagatatgccttggcaggaagaaatggaagattcttttccataccaagctacc
accgatcagctaaaagcggtgcaagatgtgaaacgggatatggaaagtgaaagaccgatg
gatcggttagtgtgtggtgatgtgggttttggtaaaactgaagttgcaattcgggctatt
ttcaaagctgttaccgcaggtaaacaagtcgcagttttagcaccaacaactattttaacc
caacaacattatcacacaatcaaagaacgtttttcaccttatcctgtaaatgtgggttta
cttaatcgttttcgtagtgcggaagaaaagcgtaatattcaaaagcgtctggctactgga
gaattagatattgttgtagggacacatcaattattaggtaaaggtgtacaatttcgagat
ttgggactgttggtaattgatgaggaacaaagatttggtgtgaatcaaaaggaaaaaatc
aaaagcctgaaaactcaagttgatgttttaactctttctgcgactcccattcccagaact
ttgtatatgtctttatctggcattcgggaaatgagtttaattaccacaccacctcccacc
agaagaccaattcaaacccatcttgcacctttaaacccggaaattgtcagaagtgcaatt
cggcaagaattagatagaggagggcaggttttttatgtagttccgcgagtggagggaatt
gaagaaacaactgcaaatttgcgagaaatgataccggggggaagatttgcaatcgcacac
ggtcaaatggaagaaagcgagttagaatcaaccatgctcaccttcggaaataatgacgct
gatatcctagtttgcacaacaatcattgaatccggtttagatattccgcgagttaacaca
attttaattgaagatgctcaccgttttggtttagctcaattatatcaattacgtggtcgt
gtgggacgtgcaggaatacaagctcacgcatggttattttatcataaacagcgtgaatta
tccgatgcagccagactaagattaagagcaattcaagaatttacccaactcggttctgga
tatcaattagcaatgcgagatatggaaattcgtggtgtgggtaacttgttaggtgcagaa
cagtcaggtcaaatggatgcaatcggatttgacttgtacatggaaatgttagaggaagca
attcgagaaattagaggtcaagaaatacccaaagttgatgatacccaaattgaccttaat
ctcaccgcgtttattccttccacttacattaccgatattgaccaaaaaatgagtgcttat
cgtgcagtagcaactgcaaaatccaaagaagaattaaaatccattgccgcggaatggact
gatagatatggaactataccagttccagcaaatcaactcttgcgagttatggaattaaaa
caattagcgagaaatataggatttagccgcattaaacctgagaacaaacagcatattgtg
ttagaaacaccaatggaagaaccagcttggaatttgttagcagaaaatttgactgaaact
atgcgaaatcgctttgtttattccagtggaaaggtgacagcaagaggtttaggtgtgttg
aaagccgaacaacaattgcaaactttaatagatgctttcggaaaaatgcaaggtgctatt
cctgaagcagttttagtttga
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