Aquella oligotrophica: CUN60_01295
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Entry
CUN60_01295 CDS
T05482
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nba
Aquella oligotrophica
Pathway
nba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUN60_01295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nba03019
]
CUN60_01295
03009 Ribosome biogenesis [BR:
nba03009
]
CUN60_01295
Enzymes [BR:
nba01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CUN60_01295
Messenger RNA biogenesis [BR:
nba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CUN60_01295
Ribosome biogenesis [BR:
nba03009
]
Prokaryotic type
rRNA processing factors
CUN60_01295
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AUR50994
UniProt:
A0A2I7N3F7
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All DBs
Position
complement(277827..280328)
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AA seq
833 aa
AA seq
DB search
MKRMLFNATYAEELRVATVDGQRLINFDIETSSKEQRRGNIYKGVVTRVEPSLEACFVDY
GTEKQGFLPFKEIDFRYLPEVNGQRGRDFTKLPEGTELIVQVEKDERGNKGAALTSYITL
PGRYLVLMPNNSRAGGISRRIEGDDRDELKSLMSQLEVPQGMSVILRTAALGRVVEELQW
DLSYLLKLWSAIKTAATEQKGSFLIYQESSLVIRSIRDHFSPDITEVLIDTEEVYNQARQ
FMAHVMPNYAERIKFYRDDVPLFSRFQIEHQIESVYSRAVHLPSGGSIVIDHTEALTAVD
VNSAKANKGADIETTALMTNLEAAEEVARQLRLRDLGGLVVVDFIDMENPRNQRDLENHF
KLQLGLDRARIQMGKLSKFGLLELSRQRLQSSLDESSSIACPRCAGVGTIRGIESSSLHI
LRIIQEEAVKNGNHLSALHVQLPVDVATYLLNERRDDVAKIEARMKVKIVLIPNVHLNSP
HYRIKKLSHDGYDSNFNKSSYNLVEVPEETPSYKAASNRLDANASKQPVVQGIQQTLPAP
VIEPRKSKSLFGHLVKKIGELFAAKPETAKTTANKSPRNRTSASTQRNNNYRQRDGARGE
KNSNTQREPRTEQITIDGQKVRPVAVNKSNDKIQTVRPSQPNAFVKAENKMEISIKPERN
TEKTARPEKTERNRNNQRNNTKQNNIERKEIVAQSAYSPKASASQPIKAKLVPEEGLNIA
NKTSSPQTIFAASASGAVVATVIASPIIADLKEAKDAIKIEINSEPIKVDPPIYTLEPVE
LGGLELVSTKEELLTVETPQIAEIKVTRFSDIVIEEKVVDPNIVYQQVETRSS
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggatgttatttaatgcgacttatgctgaagagcttagggtcgcaactgtcgat
ggacagcgattaatcaattttgatattgaaacaagcagcaaggagcagcgacgtggaaat
atctataaaggcgttgtgacccgtgttgaaccttcacttgaagcgtgtttcgttgactat
ggtacggaaaagcaagggtttttgccgtttaaggaaattgatttccgctatttaccagaa
gtaaatggacagcgcggacgcgactttaccaaactgccagaaggaacagaactaattgtt
caggtagaaaaagatgaacgcggtaataaaggggcggccctaaccagctatattacttta
cctggacgttatttggtattaatgccaaataattcacgtgcaggtggtatttctagacga
attgagggcgatgatcgagacgaattaaaatccttaatgagccaacttgaagtcccacaa
ggaatgagcgttattcttcgaactgctgcactaggaagagtggtagaagagctgcaatgg
gacttaagctatctgctcaaattgtggagtgcaataaaaacagcggccacagaacaaaaa
ggatcatttctgatatatcaggaaagcagtctagtaattcgttctatccgtgatcacttt
agcccagatataactgaagtcttgattgatacagaggaagtctataaccaggcacgccaa
ttcatggctcatgtaatgccaaattatgctgagcgtattaaattttatcgtgatgatgta
ccattgttttcaagattccaaattgaacatcaaattgagtctgtctattcacgggctgta
catttaccatctggcggctcaatagttattgaccatactgaagcgttaactgctgttgat
gtaaattcggcaaaagcgaataagggtgcagacattgaaactacggcactaatgactaat
cttgaggcagcggaagaggttgccagacaattacgcttgcgtgacttaggagggctggtt
gtagttgactttattgatatggaaaacccgcgcaatcagcgagatctggaaaaccatttc
aaactgcaactagggttagaccgggcacgtattcaaatgggtaaactatccaaattcggt
ttacttgaattatcacgacaacgcctacaatcctcacttgacgaatcaagctcaattgct
tgtccacgttgtgctggagttggaacaatacgtgggattgagtcaagctcactacatatt
ttgcgaattattcaggaagaagctgtaaagaatggtaatcacctatccgcattacatgtt
caattacctgtagatgtagcaacttatcttttaaacgaacgtcgggatgatgttgcaaaa
atagaagctcgaatgaaagtcaaaatcgtacttattccaaatgtacatcttaattcgcct
cactaccggattaaaaaactttctcatgatggctatgacagtaacttcaataagtccagc
tataatctggtggaagtaccagaagaaaccccaagttacaaggctgctagtaatcgatta
gatgccaatgcaagtaaacaaccagtggtacaaggcattcagcaaacattaccagctccg
gttattgaaccacgtaagtcaaaatctctttttggtcacctagttaagaaaattggtgaa
ttatttgcagctaaaccagaaaccgctaaaactacagcaaataaatctccgcggaatcgc
acatcagcaagtacccaaagaaataataattaccgccaacgcgatggagcacggggcgaa
aaaaactcaaatactcaacgtgagcctcggactgaacaaataacaattgatggtcaaaag
gttcgtccagttgcagtaaataaaagtaatgataagatacaaactgtgcgcccgtcacag
ccaaatgcgtttgtaaaagctgaaaataagatggaaatttcgatcaaaccagaacgaaat
acagagaaaacagctcgcccggaaaaaactgagcgaaaccgtaataatcagcggaataat
acaaagcaaaataatatcgaaagaaaagagatagtcgcgcagtctgcatatagccctaaa
gcttctgcaagtcagccgataaaggctaagttagttccggaagagggattaaatattgcc
aataaaacttcttcacctcaaacaatttttgcggcaagtgcatctggcgcggtagttgct
accgtcattgcaagcccaataattgctgatttaaaagaggctaaagacgcaattaaaata
gaaataaattctgagccaattaaagttgatccgccaatttatactctggagccagttgaa
cttggaggtttagagttagtttctaccaaagaagagttactcacggttgaaacaccacaa
attgctgaaataaaggttacccgttttagtgacattgtaattgaagaaaaagttgtagat
cccaatatagtctatcaacaggttgaaactcgttcatcataa
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