Aquella oligotrophica: CUN60_02625
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Entry
CUN60_02625 CDS
T05482
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nba
Aquella oligotrophica
Pathway
nba03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nba00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CUN60_02625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nba03019
]
CUN60_02625
03009 Ribosome biogenesis [BR:
nba03009
]
CUN60_02625
Enzymes [BR:
nba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CUN60_02625
Messenger RNA biogenesis [BR:
nba03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CUN60_02625
Ribosome biogenesis [BR:
nba03009
]
Prokaryotic type
rRNA helicases
CUN60_02625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
DUF1694
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AUR51241
UniProt:
A0A2I7N485
LinkDB
All DBs
Position
568017..569567
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AA seq
516 aa
AA seq
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MKTFNDFNLSQEMLNALNEKGFTNPSPIQALVIPEFLAEKANIIGQAQTGTGKTAAFSIP
IIESITRDGSIKAIILTPTRELAIQVCEEMYSLIGKRDLRVSAVYGGASIEQQIRSIRKG
SDIIVGTPGRIMDLMERRVLELNNLEFFVLDEADEMLNMGFVEDIEKILESTNAEKNMLF
FSATMPPSILQIAKRYMGQYKILKVENKELTTKLTEQIYFEVKEGDKFEALCRVLDFEQD
FYGIIFCRTKVEVDEVTKHLKARGYAVDSLHGDISQGQRTKTLGEFKERITNLLVATDVA
ARGIDVNNLTHVINYSIPHEAEAYVHRIGRTGRAGQKGIAITFVTPKEMSRLGQIRKITK
TDIKKQEIPAIKDVIKAKEEYLQACVEEIINEKDFYSYSKLANQLLANNDPVTLVASLLR
YQYQDEFIEESYARIEQNRISADNVKLFVALGKKDGMTPRVLLDVLHQNCKTPGRKVRDI
RIMDKFSFISVPLDEAEIIIRKLNQKNKKMVEIAKN
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacatttaatgattttaatttaagtcaggaaatgctaaatgctttaaatgaaaag
ggttttacaaatccaagcccaatccaggcgttggtaattcctgaatttctggctgaaaaa
gctaacattattggtcaggcgcaaactggaacaggtaaaactgctgcattttcaattcca
ataatagaaagtatcactagagatggtagtatcaaagctattattcttaccccaactcgt
gagctggcaattcaggtttgtgaagagatgtattcgctaattggtaaacgtgacttacgc
gtatccgcagtttatggtggtgcctcgattgagcaacaaatccgtagcatccgtaaaggg
agtgatatcatcgttggaactcctgggcggattatggatttgatggagcgtcgcgttctt
gagttaaataaccttgagttctttgttcttgatgaagctgatgagatgctaaatatgggc
tttgttgaagatattgaaaaaattcttgaatcaactaatgctgaaaaaaatatgcttttc
ttttcggcaactatgccgccctcaattttacaaattgctaaacgttatatggggcaatat
aagatattaaaagttgaaaataaagaattaactactaaacttactgagcagatttatttc
gaagtcaaagaaggcgacaaatttgaagcattatgccgagtacttgattttgaacaagat
ttttatggaattatattctgccgtactaaagtagaagttgatgaagttactaagcacctt
aaagcgcgtggctacgcagttgattctttacatggtgatatcagtcaggggcaaagaaca
aaaactctaggggagtttaaagagcggattaccaatctattagttgcaactgatgttgca
gcacgtggaattgatgtaaataatctaacgcatgtgattaactattcaattccacatgag
gctgaggcttatgtgcatcggattgggcgtactggtcgtgcaggtcaaaaaggtattgca
atcacttttgttacaccaaaagaaatgtcacgtcttgggcaaatccgtaaaatcactaaa
actgatattaagaagcaggaaattccagcaattaaagatgtaatcaaggcaaaagaagaa
tatttgcaagcttgcgtcgaagaaattatcaatgaaaaagacttttactcttattctaaa
ctggcgaatcagttactggctaataatgacccagtaactttggttgcctctctattacgt
tatcagtatcaggatgaatttattgaagaaagttatgctagaattgagcaaaaccggatt
agtgcggataatgtgaaattatttgtcgcgctaggtaaaaaagatggtatgacgccaaga
gtattattggatgtattgcatcaaaattgtaaaacaccagggcgtaaagttcgggatatt
cggattatggataaattctcatttatttcagtaccacttgatgaagcagaaattattatt
cgtaaactaaaccagaaaaataagaagatggttgagattgctaagaattaa
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