Aquella oligotrophica: CUN60_10090
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Entry
CUN60_10090 CDS
T05482
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nba
Aquella oligotrophica
Pathway
nba03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CUN60_10090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nba03400
]
CUN60_10090 (mfd)
Enzymes [BR:
nba01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CUN60_10090 (mfd)
DNA repair and recombination proteins [BR:
nba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CUN60_10090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_30
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUR52631
UniProt:
A0A2I7N857
LinkDB
All DBs
Position
complement(2215150..2218524)
Genome browser
AA seq
1124 aa
AA seq
DB search
MIKVSLPTKIHPQKNQLARLPAGGDALFIANLAAVKKLPFLYIAKDGYELRRLADEISFF
QPDLAIGVFPDYEVLPYERQSPYAELVAERLKILWQLQQQKLDIVLIQASTLQTLLPPLE
YFNQRVLWLKKTNRIDGTILREKLVAAGYQHVKQVFAEGEFAIRGSIIDIMPIGLKRGIR
IDLFDDEIETLAYFDSKTQLLEEQIDEIKLLPSREYPNDYASLKDVVARFSTRFPNEAKS
SLAKDLQSSILPAGVEFYLPLFFANCASFFDYLSQNCQVIYNEDLLSTLNHNWQEINKRY
EYYSYQYPCLKPTELFIPAEEVFAKLKVHTCWEIAKADNLYAGFDHVGGLLHGRGQFDWL
KELKTKQVIICSPSLGRLEILKNTLASQGTSSQQIDSLANIGSNKISLIKSELNQGFIYE
NSIFLTESDLYPGSIVNRSRKYRKSADSAKNDLILRDLAEIQVGDYVVHLNHGIGRYVGL
STQTIVDTNYDMLELEYQGGSKLFIPVTNLHLISRYSHLDGTNVELTKLGSKGWDKIKAK
TEQKVNDVAAELLELYARREMQEGHAYSLPEEYPEFAASFGYEPTPDQQNSFDEIIRDLT
AIKPMDRLVCGDVGFGKTEVAMRAAFIVAMSGYQVAILAPTTLLTEQLYQKFVNRFAGLP
VTVGEVSRFRSKKEVNETLHLLAEGRLDIIVGTHRLIQEDVKFAKLGLVIIDEEHRFGVK
QKERLKQLRTNVDILTMTATPIPRTLSMALDGLRDFSVIATAPSRRLSVNTITTTDDDSV
IQEAILREVRRGGQVFFLYNDVATIERMFGRLINLMPELRIAIAHGQMPESQLEQTIKDF
INQRFNLLLCSTIIETGIDIPNANTILIYRADKFGLAQLHQLRGRVGRSYHQAYCYLIIP
EKITPDAEKRLDAISMTSELGAGFNLALHDLEIRGAGEVLGDNQAGNIKEVGLSLYTEML
KKAIRKLKQGEKIHGNFEIESSCDVNLNVTAILPEDYCLSVHERLIYYKRLARAEDQEQI
DQVYQEIIDSYGLPPEPVKNLIASHSIRIIAVRLGVKKLDATSSNIVLQFIDNPPLDPLK
IVLVMQELKTCKYDGKNKLIWQIKSDSVIDKIKNVNSIIGKLAS
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagtttcactccctactaaaatacatccacaaaaaaaccagcttgctaggttg
ccagctggtggcgatgcgctatttattgctaatttggcagcagttaaaaaattaccgttt
ttatatatcgctaaagatggttatgaattaagacgtctagcggatgaaattagcttcttt
caaccagatttagccatcggggtatttcctgactatgaggttctaccttatgaacgccaa
tcgccatatgccgaattggtggctgaaaggttaaagattctttggcaacttcagcagcaa
aagcttgatattgttttgattcaggcaagtactttacagacattactgccaccacttgag
tattttaatcagcgcgtattgtggctaaagaaaactaatcggattgatggcacaatttta
cgtgaaaagcttgttgctgctggttaccagcatgttaagcaggtttttgctgagggcgag
tttgcgattcgcggttcgattatcgatattatgccaattggtctcaaacgtgggattcgg
attgatctttttgatgatgaaatagaaaccctagcttattttgatagtaaaactcagcta
ctagaagagcagattgatgaaataaaactgctcccttcgcgagagtatcccaacgattat
gccagccttaaagatgtagtagccagatttagtactagattcccaaatgaggctaaaagt
agtcttgccaaagatttgcaaagtagtattttgccagctggagtcgaattttatttaccg
ttattttttgccaactgtgccagtttttttgattatctttcgcaaaattgccaggttatt
tataatgaagatttactttcaacgcttaatcataactggcaggaaataaataaacgctac
gaatattatagttatcagtatccatgcctcaaacctaccgagttatttattccagctgaa
gaggtttttgctaagcttaaagtgcatacttgctgggaaattgctaaggctgataatctt
tatgcaggctttgatcatgttggtggtttattacacgggcgtgggcagtttgattggctt
aaagagctaaagactaagcaggttattatttgttcgccgagccttggacggcttgagatt
cttaaaaatactttagctagtcaaggaaccagctcacagcagattgatagtctggctaat
atcggtagtaataaaataagtctgattaagtccgaattaaatcagggttttatttatgaa
aatagcatatttctgactgaaagtgatttatatccgggaagtattgttaatcgaagtcgc
aaatatcggaaatcagctgattctgccaaaaatgacttaatcttgcgggatctggctgaa
attcaggtcggtgattatgttgtccatctgaatcatggaatcgggcgttatgttggactt
agtactcagactattgttgataccaattatgatatgcttgaacttgagtatcagggtggc
tcaaagctgtttatcccggtaaccaatttacatcttatcagccgttatagtcatctggat
ggtactaatgttgaattaaccaagcttggctctaaaggctgggataagatcaaggcaaaa
actgaacaaaaagtaaacgatgttgctgccgaattacttgaattatatgcccgtcgtgaa
atgcaagaaggtcatgcttattccttacctgaagaatatcctgagtttgcagcaagtttt
ggctacgaaccaacaccagatcagcaaaatagttttgatgaaattattcgtgatttaact
gcgataaaaccaatggacagattggtgtgtggtgatgtaggttttggtaaaactgaagtt
gccatgcgagctgcatttattgttgctatgtcaggttatcaggtggcgattttggcaccg
acaaccctacttaccgagcagctttatcaaaaatttgttaatcgctttgcgggcttgcca
gttaccgttggtgaggtttctcggtttcgtagcaaaaaagaagttaatgaaaccctacat
ttactagctgaaggtaggttagatataattgttggtacgcaccgcttgattcaggaagat
gtgaaatttgctaaactcgggctcgtgattatcgatgaggaacaccgttttggtgtcaag
caaaaagaacgcctgaagcagcttcgcactaacgtagatattttgacgatgactgccact
ccgattccacgaactttatcaatggctctagatggcttacgtgatttttccgtaattgcg
acagctccatcaaggaggttaagtgttaatacgattaccactaccgatgatgatagcgtg
attcaggaagcaatcctccgtgaggtgcgccgtggcggacaagtatttttcctttataat
gatgtagcaacgatagaacgaatgtttgggcgtttgattaatcttatgccagaactaaga
atcgcgattgcgcatggacaaatgcctgagtctcagcttgaacagacgattaaggatttt
ataaatcagcgttttaatctgttactatgttcgacaatcattgaaaccgggattgatatt
ccgaatgctaatactattcttatttatcgcgcagataaatttggtttagcgcaattacat
cagttacgtggacgggtagggcgcagttatcatcaggcatactgttatctaataattcca
gaaaaaattaccccagatgctgaaaaacgtcttgatgcaattagtatgactagcgaactt
ggtgctggttttaatctggctttacatgatcttgagattcgtggtgctggtgaagtactc
ggtgataatcaggctggtaatatcaaggaagttggactgtcactttacactgaaatgcta
aaaaaagcgatacgtaaattaaagcagggtgaaaaaattcatgggaattttgagattgaa
tcctcatgtgatgtcaacttgaatgtaaccgcgattctaccagaagattattgtctaagt
gtgcatgaaagattgatttattataaacggctagcacgtgcagaagatcaagagcaaatt
gatcaggtttatcaggaaattattgatagctatggcttaccacctgagcctgtcaaaaat
ctgatagcaagtcacagtattcgtattattgctgtaagattaggggttaaaaagcttgat
gctacttctagcaatatagtattacagtttatcgataatccgccattagacccattaaaa
attgttttggtgatgcaggaattaaaaacttgtaaatatgatggtaaaaataaactgatt
tggcagataaagtctgattcggtaatagataagattaaaaatgtaaattctatcattggg
aagcttgcaagttaa
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integrated database retrieval system
