Neisseria bacilliformis: H3L91_08085
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Entry
H3L91_08085 CDS
T06984
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nbc
Neisseria bacilliformis
Pathway
nbc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nbc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H3L91_08085 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nbc03400
]
H3L91_08085 (mfd)
Enzymes [BR:
nbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H3L91_08085 (mfd)
DNA repair and recombination proteins [BR:
nbc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H3L91_08085 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QMT46891
LinkDB
All DBs
Position
complement(1659810..1663682)
Genome browser
AA seq
1290 aa
AA seq
DB search
MTLPLPTKSAPRVRWLNLTAGSLPYFLTQNLPAKPPKLILTPDAETALRLQTAWQFFRPE
DNALFLPDWETLPYERFSPHQDLVSERLSVLWQLKNGLAHALFVPVSTAMQRLAPAPFLL
GRTFWLKTGQRLDIAALRQNLVEAGYSAVSNVVAGGEFAVRGGIVDLFPTGSDTPYRIDL
FDDEIDSIKTFDPDSQRTIAPVSEIRLLPAHEFPTDDAAQKIFRSRFREEVNGNPNDAAV
YKAVSGGQFGAGVEYYLPLFFEDGCATLFDYLGADALAVCVGDVHTEARRFEAEVKSRFQ
MAQGDATYPPLPPQHLYLAADQFSGCLKGYPQILPELGGAAFALPNVAVNRQAEQPLQAL
QDFQTAFDGRILLTAESAGRRETMLGFFAQHGLKPKSVDGWQAFLESCEKLCITVTPLAY
GFKLGQPENGVGRILESDTSAAADVLSDTSIRPTDVSDGIEGSLKAQARPRYTDGTPMHI
GDYVRVEQAWHGRIVALFDLNEYGDESLAGLANGIMVKFDEAGLVHYENEQLADELTFIA
RADRQPENSVGRILESDTPAASDVLSDTGIRSMGVSDDLSGSLKIALITESDLYQYVAKS
RSSTRRKKHAAVSDGLLRDLAEISIGDPVVHEEHGIGRYMGLVSMDLGGEAQEMMLLEYA
GEAQLYVPVSQLHLISRYSGAAHENVQLHKLGSAAWNKAKRKAAEKARDTAAELLNLYAR
RAAQEGHKFQFDEDDYRAFADGFGYEETEDQAAAIAAVIKDLTQARPMDRLVCGDVGFGK
TEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVAQLSRFNSSKETRA
TLTGMADGTVDIVIGTHKLVQDDISFKNLGLVIIDEEHRFGVRQKEQLKKLRANVDILTL
TATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGSVREAVLRELKRGGQVFF
LHNEVDTIENMRERLETLLPEARIGVAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETG
IDIPNANTIIINRADKFGIAQLHQLRGRVGRSHHQAYAYLLTPEYISKDAEKRLDAIAAA
DELGAGFSLAMQDLEIRGAGEILGEGQSGEMVQVGFTLYTEMLKQAVRDLKKGRQPDLDA
PLGVTTEIKLHSPALLPESYCPDIHERLVLYKRLATCESEGQINSIHEELVDRFGLPEQP
VTTLLESHRLRLMAKSLGITTIDASSDALTLTFGKHTSVEPADIILLMQSNKNYRMAGAD
RLRVTAMMESVAERVRMVRAVMKQLSPKAA
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atgaccctccccctccccacaaaatccgccccgcgcgtgcgctggctcaatctcaccgcc
ggcagcctgccctattttttaacgcaaaacctgcccgccaagccgcccaagctgattctt
acgcccgacgcggaaaccgcgttgcggctgcaaacggcgtggcagtttttccgcccagag
gacaacgcgctgtttctgcccgactgggaaacgctgccgtatgagcgtttttcgccgcat
caggatttggtgtcggagcggctgtcggtgttgtggcagctcaaaaacgggctggctcac
gcgctgtttgtgccggtgtccacggcgatgcagcgtcttgcgcccgcgccgtttctcttg
gggcgcacgttttggctgaaaacggggcagcggctggatattgcggcgctgcggcagaat
ctggtggaagcgggttacagcgcggtatccaacgtggtggcgggcggcgaatttgccgtg
cgcggcggcatcgtggatttgttccccacgggcagcgacacgccatatcgcattgatttg
tttgacgatgagattgacagtatcaaaacgtttgaccccgacagccagcgcaccatcgcg
cctgtgtcggaaatccgcctgctgccggcgcacgagttccccaccgacgacgcggcgcaa
aagattttccgcagccgtttccgcgaggaggtaaacggcaatccgaacgatgcggcggtg
tataaggcggtgagcggcgggcagtttggcgcgggggtggaatattatctgccgctgttt
tttgaagacggctgcgcgacgctgtttgactatctgggcgcggacgcgctggcggtgtgc
gtgggcgatgtgcacaccgaggcgcgacggtttgaggcggaagtgaaatcgcgtttccaa
atggcgcagggcgatgcgacttatccgccgctgccgccgcaacatctgtatctggcggcg
gatcagttttcaggctgcctgaaaggctatccgcagattttgcccgagctgggcggcgcg
gcgtttgcgttgccaaatgtggcggtgaaccgccaagccgagcagcctttgcaggccttg
caggattttcagacggcctttgacgggcggattctgcttaccgccgaaagcgcggggcgg
cgcgaaacgatgctgggctttttcgcgcaacacggtttgaaaccgaaaagcgtggacggc
tggcaggcgtttttggagagctgcgagaagctgtgcatcacggtaacgccgctggcgtat
gggtttaagttggggcagcctgaaaacggcgtaggtcggattcttgaatccgacacttcc
gcagcggcagacgttttgtcggatacaagtatccgacctacggacgtttcagacggcatc
gaaggcagcctgaaagcccaagcccgcccgcgctacaccgacggcacgcctatgcacatc
ggcgattacgttcgcgtagaacaggcatggcatgggcgcattgtcgccctgtttgacctg
aacgaatacggcgatgaaagcctggcaggtctggcaaacggcattatggtcaagtttgac
gaagcaggcttggtgcactatgaaaacgaacagttggcagacgagcttaccttcattgcc
cgcgccgacaggcagcctgaaaacagcgtaggtcggattcttgaatccgacactcccgca
gcgtcggacgttttgtcggatacgggtatccgatctatgggcgtttcagacgacctttca
ggcagcctgaaaatcgcccttatcaccgaatccgacctctaccaatacgtcgccaaaagc
cgcagcagcacccgccgcaaaaagcacgccgccgtatccgatggtttgctgcgcgacctt
gccgaaatcagcatcggcgaccccgttgtccacgaagaacacggcatcgggcgctatatg
ggcttggtgtctatggatttgggcggcgaagcgcaagaaatgatgctgctcgaatacgca
ggcgaagcgcagctttatgtgcctgtttcgcaactgcatttaatcagccgctactcgggc
gcggcgcatgaaaacgtgcagttgcacaaactcggcagcgcagcatggaacaaagccaag
cgcaaggccgccgaaaaagcgcgcgataccgccgccgaattgctcaatctctacgcccgc
cgtgccgcgcaggaaggccacaaattccagtttgacgaagacgactaccgcgcctttgcc
gacggcttcggctacgaagaaaccgaagaccaggccgccgccatcgccgccgtcatcaaa
gacttaacccaagcgcgcccgatggacaggctggtgtgcggcgacgtgggcttcggcaaa
accgaagtcgcgctgcgtgccgccttcgttgccgtgatgggcggcaaacaagtcgccgtg
ctcgcgccgaccacgcttttggtggagcagcacgcgcagaattttgccgaccgtttcgcc
gattttcccgtcaaagtcgcccagctttcgcgcttcaacagcagcaaagaaacccgcgcc
acgctcaccggtatggcagacggcacggtggatattgtcatcggcacgcacaagctggtg
caagacgacatttcgtttaaaaacttaggcttggtcatcatcgacgaagaacaccgcttc
ggcgtgcgccaaaaagagcagctgaaaaaactgcgcgccaacgtggacatcctcaccctc
accgccacgccgattccgcgcacattaagcatggccttagaaggcttgcgcgacttctcg
ctgattaccaccgcccccagccgccgactggccgtgaaaacctttgtcaaaccgttcagc
gaaggcagcgtgcgcgaagccgtattgcgcgagctcaaacgtggcgggcaagtgtttttc
ctgcacaatgaagtggatacgattgagaatatgcgcgagcggctggaaaccctgctgccc
gaagcccgtatcggcgtggcgcacgggcaactgcgcgagcgcgagctggaacaagtgatg
cgcgactttttgcaacagcggttcaacgtcttactctgttccaccatcattgaaacgggc
atagacattcccaacgccaacaccatcatcatcaatcgcgccgacaaattcggcatcgcc
cagctccaccaactgcgcgggcgcgtcgggcgcagccaccaccaagcctacgcctatctg
ctcacgcccgaatacatcagcaaagacgctgaaaaacggctggatgccatcgccgctgcc
gacgaactgggcgcaggtttttcgctggcgatgcaggacttggaaatccgcggcgcgggc
gaaatcctcggcgaagggcagtcgggcgaaatggtgcaagtcggcttcacgctctacacc
gaaatgctcaaacaagccgtgcgcgatttgaaaaaagggcgccagcccgatttggacgcg
ccattgggcgtaaccaccgaaatcaagctgcacagccccgccctgctgcccgaaagctac
tgtcccgatattcacgaacgcttggtgctctacaaacgcctcgccacctgcgagagcgaa
gggcaaatcaacagcatccacgaagaattggtggacagattcggactgcccgagcagccc
gtaaccaccctgctggaaagccaccgcctgcggttaatggcgaaaagcctcggcatcacc
accatcgacgcatcaagcgacgcgcttacgctcaccttcggcaaacacaccagcgtagag
cctgccgatattattttgctgatgcagtccaacaaaaactaccgcatggcgggggcggat
agattgcgggtaaccgccatgatggaaagcgttgccgagcgcgtgcggatggtaagggcg
gtgatgaagcagttaagcccaaaggcagcctga
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