Nocardioides baekrokdamisoli: Back2_18920
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Entry
Back2_18920 CDS
T06654
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nbe
Nocardioides baekrokdamisoli
Pathway
nbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Back2_18920 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nbe03019
]
Back2_18920 (deaD)
03009 Ribosome biogenesis [BR:
nbe03009
]
Back2_18920 (deaD)
Enzymes [BR:
nbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Back2_18920 (deaD)
Messenger RNA biogenesis [BR:
nbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Back2_18920 (deaD)
Ribosome biogenesis [BR:
nbe03009
]
Prokaryotic type
rRNA helicases
Back2_18920 (deaD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
DUF7853
AAA_30
adh_short
Motif
Other DBs
NCBI-ProteinID:
BBH17605
UniProt:
A0A3G9INJ6
LinkDB
All DBs
Position
1924423..1926225
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AA seq
600 aa
AA seq
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MDNAPAADALTFAELGLADGVLAAVTAAGYETPSAIQAATIPLLLQGRDVVGLAQTGTGK
TAAFALPILSQLDLAVSAGAPQALVLAPTRELALQVAEAFEGYASQLPSLKVLPIYGGQG
YGPQLTALRRGVHVVVGTPGRIMDHLAKGTLDLSELRFLVLDEADEMLNMGFAEDVETIL
ADTPATKQVALFSATMPPMIRKLSQKYLNDPEEVQVKSATKTNANITQRYLMCSYPQKVD
ALTRILEVENFEAMIVFTRTKSETDSLAEKLRARGFSASAINGDVAQVQREKTVNQLKDG
SLDILVATDVAARGLDVERISHVINYDLPTDLEAYVHRIGRTGRAGRKGDAISFVTPRER
YLLKAIEKHTKAAPVEMKLPSADEVNATRLSRFDDGITAALSDEKVAFFRDVVSHYVREH
NVPELDVAAALAVVLNGAAPLLLEDQPEPVRRERPVRDDRDERPQRGDRFDRDRPGRDAR
PNRDNGQPMQQYRIEVGKRHRVEPRQVVGALANEGGLRRQDFGNITIKEHFSIVELPQDL
DPAIWAALEQTRISGKLIELSVDKGPNLSAARGGDRRPRRDFGDKPAYGGDKSRTRKPRH
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggacaacgcccctgccgccgatgccctgaccttcgcggaactcggcctcgcggatggc
gtacttgccgcggtcaccgccgccgggtacgagacccccagcgccatccaggcggccacc
atcccgctgcttctgcagggccgcgacgtcgtcggcctcgcgcagacgggtactggcaag
accgccgccttcgcgctcccgatcctcagccagctcgacctcgcggtgtccgcgggcgcc
ccgcaggctctcgtcctcgcaccgacccgcgagctcgccctccaggtcgcggaggccttc
gagggatacgcgtcgcagctgccgtcgctcaaggtgctgccgatctacggcggccagggc
tatggcccgcaactgaccgcgctgcgtcgcggcgtccacgtggtggtcggtactccgggc
cggatcatggatcacctggccaagggcaccctcgacctgtcggagctccggttcctggtg
ctcgacgaggctgacgagatgctcaacatgggcttcgccgaggacgtcgagacgatcctc
gccgacaccccggcgaccaagcaggtcgcgctgttctcggcgaccatgccgccgatgatc
cgcaagctgtcgcagaagtacttgaacgaccccgaagaggtccaggtcaagagcgccacc
aagaccaacgcgaacatcacccagcgctacctgatgtgctcgtacccgcagaaggtcgac
gccctcacccgcatcctcgaggtcgagaacttcgaggcgatgatcgtcttcacgcgtacg
aagtcggagaccgactcgctcgcggagaagctgcgcgctcgtggtttcagtgcgtccgcg
atcaacggtgacgtcgctcaggtgcagcgtgagaagactgtcaaccagctcaaggacggc
tcgctcgacatcctcgtggcgaccgacgtcgccgctcgcggtctcgatgtggagcgcatc
tcgcacgtcatcaactacgacctgccgaccgacctcgaggcgtacgtccaccggatcggc
cgcaccgggcgtgccggccgcaagggcgacgcgatctcgttcgtcactccgcgcgagcgc
tacctcctcaaggcgatcgagaagcacaccaaggccgcgccggtcgagatgaagttgccg
agcgccgacgaggtcaacgcgacccggctcagccggttcgatgacggcatcaccgcggcg
ctgagcgacgagaaggtcgccttcttccgcgacgtcgtctcgcactacgtacgcgagcac
aacgtgcccgagttggacgtggcagcagctctggccgtggtgctgaacggtgccgcgccg
ttgctcctcgaggaccagccggagcccgtgcgccgtgagcgtccggtgcgcgacgaccgg
gacgagcgtccgcagcgtggcgaccgattcgaccgcgaccgtcccggtcgcgacgcccgc
ccgaaccgcgacaacggccagccgatgcagcagtaccggatcgaggtcggcaagcgccac
cgtgtcgagccgcgccaggtcgtcggcgccctcgccaacgagggtggtctgcgccgccag
gacttcggcaacatcacgatcaaggagcacttctcgatcgtcgagctcccgcaggacctg
gacccggcgatctgggctgcactcgagcagacccggatcagcggcaaactcatcgagttg
agcgtcgacaagggcccgaacctgagtgctgctcgcggcggagaccgtcgcccgcgccgc
gacttcggcgacaagccggcgtacggcggggacaagtcccggactcgcaagcctcgtcac
tga
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