Nocardioides baekrokdamisoli: Back2_22230
Help
Entry
Back2_22230 CDS
T06654
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nbe
Nocardioides baekrokdamisoli
Brite
KEGG Orthology (KO) [BR:
nbe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nbe03019
]
Back2_22230 (hrpA)
Enzymes [BR:
nbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Back2_22230 (hrpA)
Messenger RNA biogenesis [BR:
nbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Back2_22230 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
HA2_C
OB_NTP_bind
Helicase_C
DEAD
AAA_19
AAA_22
AAA_30
HA2_N
AAA_23
T2SSE
nSTAND3
NACHT
SLFN-g3_helicase
PhoH
ResIII
AAA_25
AAA_16
FtsK_SpoIIIE
SRP54
TsaE
ABC_tran
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
BBH17936
UniProt:
A0A3G9IHV8
LinkDB
All DBs
Position
2242612..2246352
Genome browser
AA seq
1246 aa
AA seq
DB search
MEAASVSIEFPADLPISQRRDDIARAISEHQVVIVAGETGSGKTTQLPKICLALGRTKIG
HTQPRRIAARSVAERIAEELGSEIGDLVGYQVRFTDRTSAASKIKVMTDGILLAELSRDR
DLKKYDTIIIDEAHERSLNIDFLLGYLKRLLPRRPDLKVIVTSATIDTQRFSDHFSDERG
VGAPVIEVSGRTYPVEVRYRPLIALPDDEDGEPVVRDMTEAIVEAVRELSAEGPGDVLVF
LPGEREIRDAADALTAAALAVEVLPLFSRLSAAEQHRVFSSHKGRRVVLSTNVAETSLTV
PGIRYVVDSGLARISRYSVRTKVQRLPIEPISQASANQRSGRCGRVEAGVAIRLYAEDDF
GARPAFTEPEILRTNLASVMLQMAWLRLGDLGRFPFVEAPDRKQVASAEQLLGELRAVRP
DGRGLTEIGRRLARLPIDPRMGRMILEADRLGCVREVLVIAAALSLQDPRERPSEDRPAE
RAAAEQLHARFRDPTSDFLTWLNLWRHLQTQQKELSSSAFRRMCVREHLNYLRVREWQDF
ESQIRQVTKEIGVKVGRPADEPDSDGIHQALLSGLLSHIGLLDEKSVPSASDRARAKRPG
PREYLGARGTKFAIFPGSALARKNPTFLMSAELVETSRLWARQNAAIKPEWAEGLAGDLA
RRSYSEPHWSTRRGSVMAYERVLLYGVPLAADRLVAFGKIDPVLSRELFIRHALVQGEWR
TRHPFLARNQQMLEEAQDLEHRSRRRDIVVDEQTLFDFYDARIGASVVSGAHFDQWWKGQ
PKQLLDFDPAMLVRDDVSDTDFPAVWDNGPLTFDLSYHFEPGAPADGLTIDVPLATLSQV
DDGDFSWHVPGLREELVTSLIRSLPKPLRVNFVPAPDKARQFLAEVPAGSEPLLDALERW
GRARTGTHVRREDWDLSRIPDHLQPTYRVVAEDGSVAATGKDLDALKAPLQPTFARAVAA
VAGESGLAYAGQRSWVFGDIPETVVAKRAGHEVITYPCLVDEGSTVGLTVVGTSVEADAR
HRRGVARLVSIIAPDPAKRVRDGLDAASKLTLAVSPYASVADLVRDCWMAVVQEAVDASP
PVRKSAELDAVVDSLGDGVQATQAVVTQVVRALEIWRGVDRLLTGRAELAHLPALQDMRA
QVARLIFPGFIHEARLSRYPTYLKAVEVRHSKLGALAADRQAMDAIASIENAYLHRVAAL
PDGCPPDTVLRRVRWLLEEYRVQLFAQNLGTAEKVSDARIRSALDA
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
gtggaggcggcgtcggtgagcatcgagttcccggcggacctgccgatctcgcaacgtcgc
gacgacatcgcccgagcgatcagtgagcaccaggtcgtgatcgtggccggcgagaccggg
tcggggaagacgactcagcttccgaagatctgtctggccctggggcgtacgaagatcggc
cacacccagccgcggcgtatcgccgcccggtcggtcgccgagcggatcgcggaggagctc
ggctccgagatcggcgacctggtcggctaccaggtccggttcacggaccgtacgtcggcg
gcatcgaagatcaaggtcatgaccgacggcatcctgctcgccgaactgagccgcgaccgc
gacctcaagaagtacgacacgatcatcatcgacgaggctcacgagcggtcgctcaacatc
gacttcctgctcggctatctcaagcgactgctgccacgtcgacccgatctcaaggtgatc
gtgacctccgcgacgatcgacacccagcggttcagcgatcatttttctgacgagcggggt
gtcggggcaccggtcatcgaggtctcggggcgtacgtaccccgtcgaggtccggtatcgg
ccgctcatcgcgctccccgacgacgaggacggtgagccggtcgtccgcgacatgaccgag
gcgatcgtcgaggccgtacgcgagctctccgcggagggcccgggtgacgtcctcgtcttc
ctgccgggtgagcgggagatccgcgacgctgccgacgcactcacggctgcggcgttggcg
gtcgaggtgttgccgttgttctcgcgactctctgcggctgagcagcatcgggtcttctcg
tcccacaagggacggagggtggtgctgtccaccaacgttgccgagacctcgctgacggtc
cccggcatccgctatgtcgtggactcgggtctggctcggatcagtcgctactcggtacgt
acgaaggtccagcgactgccgatcgaacccatctcgcaagcctcggccaaccagcggtcc
ggacgatgcggtcgtgtcgaggccggtgttgcgatccggctgtacgccgaggacgacttc
ggggctcgtccggcgttcactgagccggagatcctgcgtacgaacctggccagcgtgatg
ctgcagatggcgtggctgcgcctgggcgacctcgggcgattcccgttcgtggaggcgccc
gatcgcaagcaggtcgcctcggccgagcaactgctgggggagttgcgagccgtccgtccc
gacgggcgcggactgaccgagatcggtcggcggttggcgcggctgccgatcgatccgcgg
atgggccggatgatcctcgaggccgatcgcctcgggtgcgtacgcgaggtgttggtcatc
gccgctgcgctgtcgctgcaggacccacgcgagcgcccctcggaggaccgaccagccgaa
cgggctgccgccgagcagctgcacgcccggttccgtgatccgacgtcggacttcctcacc
tggctgaatctgtggcggcacctgcagacgcagcagaaggagttgagttccagcgcgttc
cggcggatgtgtgtacgcgagcacctcaactacctgcgggtgcgtgagtggcaggacttc
gagtcgcagatccgacaggtcaccaaggagatcggggtcaaggtcggtcggccggctgac
gagcccgactccgacggcatccaccaggcgctgctgagtgggctgctctcgcacatcggt
ctgctcgacgagaagtcggtgccgtccgcgagcgaccgcgcacgagcaaagcgccccggc
ccgcgggagtacctcggtgctcgtggcacgaagttcgcgatcttccccggcagtgcgctg
gcgcggaagaacccgaccttcctgatgtccgccgaactggtcgaaaccagccgactgtgg
gcccggcagaatgccgcgatcaagcctgagtgggccgagggcctcgccggggacctggcc
aggcgcagctattcggagccgcactggtcgacccgccgcggctcggtgatggcgtacgaa
cgggtcctcctctacggcgttccgctcgcggcggaccggctggtcgcgttcgggaagatc
gatcctgtgctctcgcgcgagctgttcatccggcacgcgctcgtgcagggagagtggcgt
acgcggcacccgttcctcgcccggaaccagcagatgctggaggaggcgcaggatctcgag
catcgatcccgccgtcgcgacatcgtcgtggacgagcagacgctgttcgacttctacgac
gcgcggatcggcgcgtccgtggtgagcggtgcccatttcgaccagtggtggaagggtcag
ccgaagcagctgctggacttcgacccggcgatgctcgtacgcgacgacgtcagcgacacc
gacttcccggccgtgtgggacaacgggccgctgaccttcgacctgagttatcacttcgag
cccggtgccccggctgacgggctgaccatcgacgtgccgctggccactctgtcccaggtc
gacgacggggacttctcgtggcacgtgccgggtctgcgcgaggaactggtcacctcgctc
atccggtcgctgcccaagcctctgcgggtcaacttcgtacccgcgcccgacaaggcgcgg
cagttcctcgccgaggtgccggccgggtccgagccgttgctcgatgcgctggagcgctgg
ggacgcgcgcggaccggcacgcacgtacgccgcgaggactgggacctgtcgagaatcccg
gaccatctgcagccgacctaccgagtcgtcgccgaggacggttcggtcgccgccacgggc
aaggatctcgacgcactcaaggccccgctgcagccgaccttcgcccgcgccgtcgccgcc
gtcgcgggggagtcgggcctggcgtacgcaggccagcggagctgggtgttcggcgacatt
ccggagacggtcgtcgccaagcgagccggccacgaggtgatcacgtacccgtgtctggtc
gacgagggctcgacggtcgggttgaccgtggtcggcacgtcggttgaagccgacgcccgg
caccgtcgcggcgtggccaggctggtgtcgatcatcgcgcccgatccggccaagcgcgta
cgcgacgggctcgatgccgcctcgaaactgaccctggccgtgagcccctacgcctctgtt
gctgacctggtccgcgactgctggatggcggtggtccaggaggcggtggacgcatcgccg
ccggtacgcaagtcggcggaactcgacgctgtggtcgactccttgggcgacggtgtccag
gccacgcaagccgtcgtgacccaggtggtccgcgcactggagatctggcgcggggtcgac
cgattgctcaccggccgagccgagttggcgcacctgcccgcgttgcaggacatgcgggcg
caggtggcgcggcttatcttcccggggttcatccacgaggcccggttgtcgcgctacccg
acctatctgaaggcggtcgaggtccggcacagcaaactcggagcactggcggccgatcgt
caggcgatggatgcgatcgccagcatcgagaacgcgtacctgcaccgggtcgctgccctc
ccggacggctgtccgccggacaccgtcctgcgccgggtgcgctggctgctcgaggagtac
cgcgtgcagttgttcgcgcagaacctcggtacggctgagaaggtcagcgacgcgcggatc
cggtccgcgctcgacgcgtag
DBGET
integrated database retrieval system
