KEGG   Natronorubrum bangense: DV706_12040
Entry
DV706_12040       CDS       T05942                                 
Name
(GenBank) RtcB family protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
nbg  Natronorubrum bangense
Brite
KEGG Orthology (KO) [BR:nbg00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:nbg03016]
    DV706_12040
Enzymes [BR:nbg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     DV706_12040
Transfer RNA biogenesis [BR:nbg03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    DV706_12040
 Prokaryotic type
   tRNA splicing ligases
    DV706_12040
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: QCC55135
UniProt: A0A4D6HNT2
LinkDB
Position
complement(2389301..2390767)
AA seq 488 aa
MSNSTFDADGITLEKVREYVWEIPQEGDMRTPARVLASEALLEEIKEDKTLQQLKNTTHL
PGITKHAICMPDGHQGYGFPVGGVGALDAENGCISPGAVGYDINCGVRMMKTNLTYDDLK
GNEQELVDSLFANIPSGLGGGGIVESGVDTVDEILARGVDWALENGYAVEDDLLHCEDEG
HREEADPSKISQKAKDRGKNQIGSLGSGNHFLEVQRVTDVFHDEVGSAYGLEEDQIVVLI
HCGSRGLGHQTCNDYLRKIEKQHQGLLNKLPDKELAAAPAGSQLAEDYYGAMNAAINFAW
VNRQLIMHRTREVFERVFDRSWEEMEMDLLYDVAHNIAKKEVHDVDGEERELYVHRKGAT
RAFPAGHPDVPEAYRDVGQPIIIPGSMGAGSYVLRGGENSMELTFGSTAHGAGRLMSRTQ
AKNEYWGGDVQDELEAQDQIYVKAQSGATVAEEAPGVYKDVDEVVRISDELGIGDKVART
FPVCNIKG
NT seq 1467 nt   +upstreamnt  +downstreamnt
atgagcaattccacgttcgacgccgacggcatcacgctcgagaaagtgcgtgagtacgtc
tgggaaatcccacaagagggcgacatgcgcacccccgcccgagtgttggcgagcgaagcg
ctcctcgaggagatcaaagaggacaagacactccagcagctcaagaacacgacgcatctg
ccgggaatcacgaaacacgcgatctgtatgcccgacggccatcagggctacggcttcccg
gttggcggcgtcggggcacttgacgccgaaaacggctgtatctcgccgggcgcggtcggc
tacgacatcaactgtggggtccgtatgatgaaaacgaacctcacgtacgacgatctcaaa
ggcaacgagcaggagctcgtcgactccctctttgccaacattccgtcggggcttggtggg
ggcggcatcgtcgaatccggtgtcgacaccgtcgacgaaatcctcgctcggggcgtcgac
tgggccctcgagaacggctacgccgtcgaggacgacctgctccactgtgaggacgaaggc
caccgggaagaggccgatccctcgaagatcagccagaaagcgaaagaccgcgggaaaaac
cagatcggctcgctggggtcggggaatcacttcctcgaggtccagcgcgtgactgacgtc
ttccacgacgaagtggggtcggcctacgggctcgaggaagaccagatcgtcgttttgatt
cactgtggctcccgtggactaggtcatcagacgtgcaacgactacctgcggaagatcgaa
aaacaacatcaggggctgttgaacaagctcccggacaaggaactcgcggccgcgcccgcg
ggctcacagctggccgaggactactacggggcgatgaacgcggcgatcaacttcgcgtgg
gtcaaccgccagctgatcatgcatcgcacgcgcgaggtcttcgagcgcgtcttcgaccgc
tcgtgggaggagatggagatggacctgctctatgacgtggcgcacaacatcgcgaaaaaa
gaggtccacgacgttgatggggaagaacgcgaactctacgtccaccgcaaaggagcgaca
cgggcgttcccggccggccaccccgacgtgccggaggcctaccgcgacgtcggccagcca
atcatcatccccggcagcatgggtgcgggaagctacgtcctccgcggtggcgagaactcg
atggagctgacgttcggctcgaccgcccacggtgcggggcgactgatgagccgaacccag
gccaaaaacgagtactggggcggcgacgtccaggacgaactcgaggcccaggaccagatc
tacgtcaaagcccaatcaggtgcgacggtcgccgaggaagcgccgggtgtctacaaggac
gtcgacgaagtcgtccgaatctcagacgaactcggtatcggcgacaaggtcgcacggacg
ttccccgtctgtaacatcaaaggctaa

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