Nocardioides bizhenqiangii: SHK19_01085
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Entry
SHK19_01085 CDS
T10239
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nbi Nocardioides bizhenqiangii
Brite
KEGG Orthology (KO) [BR:
nbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nbi03032
]
SHK19_01085 (topA)
03400 DNA repair and recombination proteins [BR:
nbi03400
]
SHK19_01085 (topA)
Enzymes [BR:
nbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SHK19_01085 (topA)
DNA replication proteins [BR:
nbi03032
]
Prokaryotic type
DNA Topoisomerases
SHK19_01085 (topA)
DNA repair and recombination proteins [BR:
nbi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SHK19_01085 (topA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WQQ26842
UniProt:
A0ABZ0ZRC2
LinkDB
All DBs
Position
227718..230417
Genome browser
AA seq
899 aa
AA seq
DB search
MAHKLVIVESPAKARTIGGYLGDGYVVESSIGHIRDLPNNAADTPAKIKDKPWGRLAIDV
DNDFTPYYVVPRDKKSHISKLKGLLKDADELFLATDEDREGEAIAWHLLDELKPKDIPVR
RMVFHEITKAAIQEAAANPRDLDMDLVEAQETRRILDRLYGYEVSPVLWRKVMSGLSAGR
VQSVATRLVVDREKERMAFRVASYWDLEGTFDAGSKHEQRMFPAKLHSLDGTRVASGSNF
GPDGLLKGRADVVHLDRNRAESLVAALADASFEVRSVESKPYKRSPYPPFRTTTLQQEAS
RKLGMGASMTMSVAQRLYENGFITYMRTDSTTLSGSAVGAARSQVRELYGAEYLPDAPRT
YTSKVKNAQEAHEAIRPAGDSFRTPAQTGLTGDQFRLYELIWMRTVASQMKDAVGQSVSV
RIGGGAATGEDVVFSASGRVITFHGFLKAYVEGTDEGAAKDDQETRLPALVEGDPVSAAS
LSASGHETKPPSRYTEATLIKELEDRQIGRPSTYASIIGTILNRGYVYKKGTALVPAWIA
FSVVRLLEEHFTRLIDYDFTALMETVLDDIAGGEKDRVTELQEFYYGSERLAGLKPLVDG
LGDIDAKALATFPIGDPDEGIALRVGKYGPYLETTAGPDDDGSFVSQRANVPEDLPPDEL
TLAKAKELLANPAGEEIELGSHPETGLRVVAKNGRYGPFVTEELPEDAPKSAKPRTGSLF
KSMSLDTITLADAVMLLSLPRVVGEDPATGEEITAQNGRYGPYLKKGTDSRSLQTEDQLF
TVTLEEALAIYAQPKQRGRAAAAPPLKELGNDPVSGQPIVVKAGRFGEYVTDGEYNATLR
KDDSVEAITLARAAELLAERREKGPAKKAAKRGAKKTAKKTTKKATAKKTTKKSAAKKK
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
gtggcacacaagttggtgatcgtcgagtcaccggccaaggcccgcacgatcggcgggtac
ctcggcgacggctatgtcgtcgagtcctcgatcggtcacatccgcgacctcccgaacaac
gccgcggacactccggcgaagatcaaggacaagccgtgggggcggctcgccatcgacgtc
gacaacgacttcacgccctactacgtcgtgccccgcgacaagaagtcccacatctccaag
ctcaagggtttgctcaaggacgcggacgagctcttcctcgccaccgacgaggaccgcgag
ggggaggcgatcgcctggcacctcctcgacgagctgaagccgaaggacatccccgtgcgg
cggatggtcttccacgagatcaccaaagccgccatccaggaggccgccgccaacccgcgg
gacctcgacatggacctggtcgaggcgcaggagacccgtcggatcctcgaccgcctctac
ggttacgaggtctccccggtgctgtggcgcaaggtcatgtccggcctgtccgcgggccgc
gtgcagtcggtggcaacccgcctggtcgtggaccgggagaaggagcggatggcgttccgg
gtcgcgtcttactgggacctcgagggcaccttcgacgccgggtcgaagcacgagcagcgg
atgttcccggccaagctccactcgctcgacggcacccgcgtcgcctccggcagcaatttc
ggacccgacgggctgctgaagggacgcgccgacgtcgtccacctggaccggaatcgcgcc
gagtcgctggtcgcggcgctcgccgacgcgtcgttcgaggtgcgctcggtcgagtccaag
ccctacaagcggtcgccgtacccgccgttccggacgaccaccctccagcaggaggccagc
cgcaagctcggcatgggggccagcatgaccatgtcggtcgcgcagcgcctctacgagaac
ggcttcatcacctacatgcggaccgactcgaccacgctctccggcagcgccgtcggcgcg
gcccggtcgcaggtgcgcgagctgtacggcgcggagtacctccccgacgcgccgcgcacc
tacaccagcaaggtcaagaacgcccaggaggcgcacgaggcgatccggcccgccggcgac
tcgttccgcacgccggcgcagaccggcctcaccggcgaccagttccggctgtacgagctg
atctggatgcgcaccgtcgcctcccagatgaaggacgcggtcggccagtccgtgtcggtg
cggatcggcggcggcgccgcgacgggcgaggacgtcgtcttctcggcgtccggcagggtg
atcaccttccacggcttcctcaaggcgtacgtcgagggcaccgacgagggtgccgccaag
gacgaccaggagacccggctgcccgcgctcgtcgagggcgacccggtctccgcggcgtcc
ctcagtgccagcggtcacgagaccaagccgccgtcccgctacaccgaggccaccctgatc
aaggagctcgaggaccgccagatcggccggccgtcgacgtacgcctcgatcatcgggacc
atcctcaaccgcggctacgtctacaagaagggcaccgcgctggtgccggcctggatcgcg
ttctccgtggtccggctgctcgaggagcacttcacccggctgatcgactacgacttcacc
gcgctgatggagaccgtccttgacgacatcgccggcggcgagaaggaccgggtcaccgag
ctccaggagttctactacggatcggagcggctggccggcctcaagccgctggtcgacggt
ctcggcgacatcgacgccaaggcgctcgcgaccttccctatcggcgaccccgacgagggg
atcgccctgcgggtcggcaagtacggcccctacttggagaccactgcggggccggacgac
gacgggtccttcgtgtcccagcgcgccaacgtgcccgaggacctgccgccggacgagctc
acgctcgccaaggccaaggagctgctggccaacccggcgggcgaggagatcgagctcggc
tcccacccggagacgggcctgcgggtcgtggccaagaacggccgctacgggccgttcgtc
accgaggagctccccgaggacgctcccaagagtgccaagccacgcaccggctcgctcttc
aagtcgatgtccctcgacaccatcaccctggccgacgcggtcatgctgctgtccctgccg
agggtcgtcggcgaggatcccgcaaccggtgaggagatcaccgcccagaacggccgctac
gggccctacctcaagaagggcaccgactcccggtcgctccagaccgaggaccagctcttc
acggtgaccctcgaggaggcgctggcgatctacgcccagcccaagcagcgcggccgggct
gccgcggcgccgccgctgaaggagctcggcaacgacccggtctccggccagccgatcgtg
gtgaaggccggccggttcggcgagtacgtcaccgacggtgagtacaacgccaccctccgc
aaggacgactcggtcgaggcgatcaccctcgcgcgcgccgccgagctgctcgccgagcgc
cgcgagaagggtccggccaagaaggccgccaagcgcggcgcgaagaagacggccaagaag
accaccaagaaggccacggccaagaagacgaccaagaagagcgcggccaagaagaagtga
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