Nocardioides bizhenqiangii: SHK19_02325
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Entry
SHK19_02325 CDS
T10239
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nbi Nocardioides bizhenqiangii
Pathway
nbi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nbi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SHK19_02325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nbi03021
]
SHK19_02325
03400 DNA repair and recombination proteins [BR:
nbi03400
]
SHK19_02325
Enzymes [BR:
nbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SHK19_02325
Transcription machinery [BR:
nbi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SHK19_02325
DNA repair and recombination proteins [BR:
nbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SHK19_02325
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Orbi_VP1
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WQQ27072
UniProt:
A0ABZ0ZS82
LinkDB
All DBs
Position
470320..474177
Genome browser
AA seq
1285 aa
AA seq
DB search
MLDVNFFDQLQIGLATADDIRTWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITAVDEDARHRDLSSLEAKVGQQRKMLQDRLDLAIADRSKKLEGD
LETLESEGAKADQKRKVKDGAEREMAQIRKRSEAEIARLEEVWETFKSLKVQDLMGDEVL
YREMKNWFGKYFEGHMGATAIQKRLESFDIEAEVGSLRETIATGKGQRKVRALKRLKVVD
AFRKTGNKPQGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVSGPQLKLHQCGLPKQMALELFKPFVMKRLVDLSHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSTNNILKPSDGRPVTMPTQDMIIGLFFLTTEREGSIGEGR
VFSSPAEAIMAFDRGEILLQSKVRIRFDDAVVEGAAPGEPIILETTLGRSLFNDTLPADY
PFVNFEVGKKQLGAIVNDLAERYGKVEVAASLDALKDTGFHWATRSGVTVSIADVTTPPN
KLELLSGFEAKAAKIQTQFERGLITDDERRQELIEIWTEAGKQVGDAMEKAFDKTNPIFM
QVISGASGNFNQIRQVGAMRGLVANPKGEIIPRPIKANFREGLSVLEYFISTHGARKGLA
DTALRTADSGYLTRRLVDVSQDVIIREDDCGTERGLPKVIGERNAEGTVVKHENAETAAY
ARTSAVDIAHPDTGEQLAAAGDDLGDVKIAELIEAGIEEVVVRSVLTCDAKTGTCAKCYG
RSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVVELFEAR
TPKGVSPISEAAGRVQIEETDKARKVLVTPDDGSDVKEYAVSRRSRLLVADGDHIEVGQM
LTQGTPDPKEVLRILGVRRTQQHLVDEVQEVYRSQGVSIHDKHIEIIVRQMLRRITVLES
GETNLLPSDLVDRGKFEEENRRVVSEGGKPASGRPELMGITKASLATESWLSAASFQETT
RVLTDAAINARSDSLRGLKENVIIGKLIPAGTGLERYRAIRVEPTEEARQAAYAVTGYES
YDYEFGATGGQAVALDDFDFGSYQN
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtgaacttcttcgaccagcttcagatcggcctggccaccgcggacgacatc
cgcacgtggagccacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagcgtgacggcctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgctcgaaggtgcggcgcgagcggatgggccacatcgagctcgccgccccc
gtcacccacatctggtacttcaagggtgtcccgagccggctcggctacctgctcgacctg
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcaccgccgtcgac
gaggacgcgcgccatcgcgacctgtcgtcgctcgaggccaaggtcggccagcagcgcaag
atgctgcaggaccgcctcgacctcgcgatcgccgaccgctccaagaagttggagggcgac
ctcgagacgctggagtcggagggtgcgaaggccgaccagaagcgcaaggtcaaggacggc
gcggagcgcgagatggcgcagatccgcaagcggtccgaggccgagatcgcccgcctcgag
gaggtctgggagaccttcaagagcctcaaggtccaggacctcatgggtgacgaggtgctg
taccgggagatgaagaactggttcggcaagtacttcgagggccacatgggcgccacggcg
atccagaagcgcctcgagagcttcgacatcgaggccgaggtcgggtcgctgcgcgagacc
atcgcgaccggcaagggccagcgcaaggtccgtgccctcaagcggctcaaggtcgtcgac
gcgttccgcaagaccggcaacaagccccagggcatggtgctcgacgccgtcccggtcatc
ccgcccgacctgcgcccgatggtgcagctcgacggcggccggttcgcgacgtcggacctc
aacgacctctaccgccgcgtgatcaaccggaacaaccggctcaagcggctgctcgacctc
ggcgcccccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgactcg
ctgttcgacaacggccgtcgtggtcgtcccgtcaccggcccgggcaaccggccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtggactactcgggccgttcggtcatcgtctccggtccgcagctcaagctgcaccag
tgcggtctcccgaagcagatggcgctcgagctgttcaagccgttcgtcatgaagcggctc
gtcgacctctcgcacgcgcagaacatcaagtccgccaagcggatggtggagcgggcccgc
ccggtcgtgtgggacgtcctcgaagaggtcatcaccgagcacccggtgctgctcaaccgt
gcgcccacgctgcaccgtctcggcatccaggcgttcgagccgcagctgatcgaaggcaag
gcgatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggggaccag
atggcggtgcacctgccgctgtccgccgaggcgcaggccgaggcgcggatcctgatgctg
tcgaccaacaacatcctgaagccgtccgacggccgaccggtcaccatgccgacccaggac
atgatcatcgggctgttcttcctcaccaccgagcgcgagggctcgatcggcgagggccgg
gtgttctcgtcgcccgccgaggcgatcatggcgttcgaccggggcgagatcctgctgcag
agcaaggtccggatccggttcgacgacgctgtcgtcgagggtgcggctccgggtgagccg
atcatcctcgagaccacgctgggccgctcgctgttcaacgacaccctgcccgcggactac
cccttcgtgaacttcgaggtgggcaagaagcagctcggcgcgatcgtcaacgacctcgcg
gagcgctacggcaaggtcgaggtggccgcgtcgctggacgccctcaaggacaccggcttc
cactgggccacccggtccggcgtgaccgtgtccatcgcggacgtcacgaccccgcccaac
aagctcgagctgctctcgggcttcgaggcgaaggccgcgaagatccagacccagttcgag
cgcggcctgatcaccgacgacgagcgtcgccaggagctcatcgagatctggaccgaggcc
ggcaagcaggtcggtgacgcgatggagaaggcgttcgacaagacgaacccgatcttcatg
caggtcatctccggcgcctccggtaacttcaaccagatccgccaggtcggcgccatgcgt
ggcctggtggcgaacccgaagggcgagatcatcccgcggccgatcaaggcgaacttccgc
gagggtctctccgtgctggagtacttcatctccacgcacggcgcccgcaagggtctggcc
gacaccgcgcttcgcaccgcggactcgggttacctcacccgtcgtctggtcgacgtgtcg
caggacgtcatcatccgcgaggacgactgcggcaccgagcgtggtctgccgaaggtcatc
ggtgagcgcaacgccgagggcacggtggtcaagcacgagaacgccgagaccgcggcgtac
gcccgcacctcggccgtcgacatcgcccaccccgacaccggcgagcagctcgctgccgcc
ggcgacgacctcggcgacgtcaagatcgccgagctgatcgaggccgggatcgaggaggtc
gtggtccgctccgtgctgacctgcgacgccaagaccggcacctgcgcgaagtgctacggc
cgctcgctggcgaccggcaagctcgtcgacatcggcgaggcggtcggcatcatcgctgcc
cagtcgatcggtgagcccggcacgcagctgacgatgcggaccttccacaccggtggtgtg
gcgtcggccgacgacatcacgcagggtctgccgcgtgtggtcgagctgttcgaggcccgc
accccgaagggtgtctctccgatctccgaggccgccggccgggtgcagatcgaggagacc
gacaaggcccgcaaggtcctggtcaccccggacgacggcagcgacgtcaaggagtacgcc
gtctcgcgccgctcgcggctgctggtcgccgacggcgaccacatcgaggtcggccagatg
ctcacccagggcaccccggacccgaaggaggtgctgcggatcctcggtgtccggcggacc
cagcagcacctcgtcgacgaggtccaggaggtctaccggagccagggcgtgtcgatccac
gacaagcacatcgagatcatcgtgcggcagatgctgcgccggatcacggtgctcgagtcg
ggcgagaccaacctgctgccgtccgacctggtcgaccgcggcaagttcgaggaggagaac
cggcgcgtggtctccgagggcggcaagccggcctcgggacgtccggagctgatgggcatc
acgaaggcctcgctggccacggagtcgtggctctcggccgcctccttccaggagaccacc
cgggtgctcaccgacgccgcgatcaacgctcgctccgactcgctgcgcggtctgaaggag
aacgtcatcatcggcaagctgatccccgccggcaccggcctggagcgctaccgcgcgatc
cgggtcgagccgaccgaggaggcgcgccaggcggcctacgccgtcaccggctacgagtcc
tacgactacgagttcggtgccaccggcggccaggccgtcgcgctcgacgacttcgacttt
ggctcgtaccagaactga
DBGET
integrated database retrieval system
