Nocardioides bizhenqiangii: SHK19_09865
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Entry
SHK19_09865 CDS
T10239
Name
(GenBank) DNA polymerase ligase N-terminal domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nbi Nocardioides bizhenqiangii
Pathway
nbi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SHK19_09865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nbi03400
]
SHK19_09865
Enzymes [BR:
nbi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SHK19_09865
DNA repair and recombination proteins [BR:
nbi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SHK19_09865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WQQ28522
LinkDB
All DBs
Position
complement(2058486..2060054)
Genome browser
AA seq
522 aa
AA seq
DB search
MGDLAPYRRMRNFGHTPEPAGADAARGNGERRFVVQRHRASRLHYDLRFEIDGVLVSWAV
PKGPTLDPKTKRMAVHVEDHPIEYLHFEGVIPSGQYGGGDVIVWDTGTWEPAKTEDPAQA
LEQGELHAEMHGEKLRGRLVLVRRDDKSGDKEQWLLMHKKDEHAVPGWDPEEHPRSVLTG
RTNDEVKDDPDRIWRSGAPADEAEVSMLPEPVDDEAIAALEGLGKQGTWEVFGRQLKVTN
LDKVLFPGDPPVTKRELLAYVARIAPFSLPYLEGRAINLNRFPDGAGKKGFWHKELPKHA
PEWLPRWDNPEADPGETTTYLVVDEPAALLWAANFGALEWHPWTSRTSAMHEPTYALIDL
DPGERTSWEELLDLARLHRTALDHLGVVGRPKVTGKRGIQVWIPIRPGYTFDETRAWTER
LSKTVGKVLPDLVSWKWEKKARGGLARLDYTQNAINKTLVAPYSTRPAAGAPVSVPIGWA
ELDDPDLRPDRWTIRTVLDRIEDRGDPFRALLGVEQDLPEIS
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacctcgcgccgtaccgccgcatgcggaacttcggtcatacgccggagcccgcc
ggtgcggacgcggcccgcggcaacggtgagcgacggttcgtcgtccagcgccatcgcgcg
agccggctgcactacgaccttcggttcgagatcgacggagtgctcgtgagctgggcggtt
ccgaaggggccgaccctcgatcccaagaccaagcggatggcggtgcacgtcgaggatcac
ccgatcgagtacctgcacttcgaaggcgtgatcccgagcggacagtacggcggcggcgac
gtcatcgtctgggacaccggcacctgggagccggcgaagaccgaggacccggcgcaggcc
ctcgagcagggcgagctgcacgccgagatgcacggtgagaagctgcgcggaaggctggtg
ctggtgcggcgcgacgacaagtcgggcgacaaggagcagtggctgctcatgcacaagaag
gacgagcacgccgtgccaggctgggaccccgaggagcacccgcgctcggtgctgaccggt
cgcaccaacgacgaggtgaaggacgacccggatcggatctggcggtccggcgcgcccgcc
gacgaggcggaggtgtcgatgctccccgagccggtggacgacgaggcgatcgcggcactc
gaggggctcggcaagcagggcacctgggaggtcttcggccgacagctcaaggtcacgaac
ctcgacaaggtgctgttccccggcgacccgccggtgaccaagcgcgagctgctggcgtac
gtcgcgcggatcgcgccgttctcgcttccctacctcgagggccgcgcgatcaacctcaac
cgcttccccgacggcgcggggaagaaggggttctggcacaaggagctgccgaagcacgcg
ccggagtggctgccgcgatgggacaacccggaggcggaccccggcgagacgacgacctac
ctcgtggtcgacgagccggccgcgctcctctgggctgccaacttcggcgcgctggagtgg
cacccgtggacgtcccggacgtcggcgatgcacgagccgacgtacgccctgatcgacctc
gacccgggtgagcggacctcgtgggaggagctgctcgacctcgcccgcctgcaccggaca
gcgctcgaccatctcggtgtcgtcggacgaccgaaggtgaccggcaagcgtggcatccag
gtctggatcccgatccgccccggctacaccttcgacgagacccgggcatggaccgagcga
ctgtcgaagaccgtcggcaaggtcctgcccgacctggtcagctggaagtgggagaagaag
gcccgcggcggcctggcccgcctcgactacacccagaacgcgatcaacaagacgctggtg
gcgccgtactcgacgcgtccggcggcgggtgcgccggtttccgtgccgatcggctgggcc
gagctcgacgatcccgacctgcgaccggaccggtggacgatccgcaccgtcctcgaccgg
atcgaggaccgcggcgacccgttccgcgcgctgctcggcgtggagcaggacctgcccgag
atcagctga
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