Nocardioides bizhenqiangii: SHK19_13595
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Entry
SHK19_13595 CDS
T10239
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nbi Nocardioides bizhenqiangii
Pathway
nbi03030
DNA replication
nbi03430
Mismatch repair
nbi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHK19_13595 (dnaE)
03430 Mismatch repair
SHK19_13595 (dnaE)
03440 Homologous recombination
SHK19_13595 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nbi03032
]
SHK19_13595 (dnaE)
03400 DNA repair and recombination proteins [BR:
nbi03400
]
SHK19_13595 (dnaE)
Enzymes [BR:
nbi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SHK19_13595 (dnaE)
DNA replication proteins [BR:
nbi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SHK19_13595 (dnaE)
DNA repair and recombination proteins [BR:
nbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SHK19_13595 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MamS_MamX
DNA_pol_IIIA_C
OB_MCM10
DUF655
Motif
Other DBs
NCBI-ProteinID:
WQQ28789
UniProt:
A0ABZ0ZY31
LinkDB
All DBs
Position
complement(2796896..2800468)
Genome browser
AA seq
1190 aa
AA seq
DB search
MAAAGDRSDFVHLHVHTEYSMLDGASLLDGLFARVSDLGMSSIAMTDHGNLHGAYDFYSK
AKKHDIRPIIGLEAYLTPQTNRSERRRVKWSKGGGFNGAEEGGDDVAGGGAYTHMTMWAA
TTEGMHNLFRLSSRSSLEGFFYKPRADRELLQTYAKGLIATTGCPSGEIQTRLRLGQYDE
ARRSAAEFQEIFGKDSFFLELMDHGIDIEKRVRDDLLRLGKDLGIPPVATNDSHYNNPED
SDAHDALICVASGKRLSDTNRLKFDGGGYYIKSAAEMRELWADRFGMPEACDNTLLIAER
CDVEFTESNGGYMARADVPAGEIEESWFVKEVWRGIESRYPGDRLTPEVKQRVAMELDVI
ASKGYCGYYLVVADFIQWSKDNGIRVGPGRGSGAGSIAAYALRITDLCPLEHGLIFERFL
NPERPSMPDFDIDFDERRRTEVIQYVSDKYGSDRVAYIATFGRLKAKAAIKDAARVLDYG
FAVSDRITKALPPDIMGKGVPLKEIFNSEHRRYGDGAEFRSLYEQDTDVRTIYQTAVGLE
GQIRNWGVHAAGVIMSSEPLVDIVPIMARPQDGAVITQFDYPMCEALGLVKMDFLGLRNL
TVLDDALDNIRANRGEEVVLEELTFDDPATYELMSAGDTLGVFQLDGGPMRALLRSMRPD
KFADISAVGALYRPGPMGADSHNKYARRKTGREPIDPIHPELATALEPVLGETYGLIVYQ
EQVMEIAQVLAGFTLGQADNLRRAMGKKKKEELDKQYAGFQSGMLERGYSQGAITALWEI
LLPFSDYAFNKAHSAAYGVISYWTAYLKANYTAEYMAALLTSVKDDKDKMAIYLGECRRL
KIQVLPPDVNESAKNFTPVGTDIRFGMTAIRNVGANVVEQVVAARESKGRYESFNDFLDK
VPALVCNKRVIESLIKAGAFDDLKHRRRALVAIHETAVDQYVDIKRNEAIGQDSLFAGLD
DLDGGDFGVSVTIPDLDEWDKTTLLGHERDMLGLYVSDHPLLGLEHVLAGTADCTIGELM
TDEERPDQATVTVSGLVTAVQRKITKKGDPWAMITLEDLEGAIEVLLFPSAYQLASTHLV
PDAIITVKGRLSRNKEQPELHAMEVTVPDLDTDNDGPVVISLPATRCTAPVIAQLKEVLG
THPGLTEVRLRLLTRDATKLMRLDDRLRVSPSPALFADLKQLLGPGCLAG
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgccggggaccgatctgatttcgtccacctccatgtccacacggagtactcc
atgttggacggggcgtcgctgctcgacggcctcttcgcgcgggtgagcgacctcggcatg
tcgtcgatcgcgatgaccgaccacggcaacctgcacggggcctacgacttctactccaag
gccaagaagcacgacatccgcccgatcatcgggctcgaggcgtacctcacgccgcagacc
aaccgctccgagcgccgtagagtcaaatggagcaagggcggcggtttcaacggggccgag
gagggcggcgacgacgtcgcgggaggcggtgcctacacccacatgacgatgtgggccgcg
acgaccgagggcatgcacaacctgttccggctctcgtcccggtcgagcctcgagggtttc
ttctacaagccgcgcgccgaccgcgagctgctccagacctacgccaagggcctgatcgcc
acgaccggctgcccgtcgggtgagatccagacccggctgcgcctcgggcagtacgacgag
gcccgtcgctcggccgccgagttccaggagatcttcggcaaggacagcttcttcctcgag
ctgatggaccacgggatcgacatcgagaagcgggtccgcgacgacctgctgcggctcggc
aaggacctcggcatcccgccggtcgccaccaacgactcccactacaacaaccccgaggac
tccgacgcccacgacgcactgatctgcgtcgcctcgggcaagcggctgtccgacaccaac
cggctcaagttcgacggcggcggctactacatcaagtccgccgccgagatgcgcgagctg
tgggccgaccggttcgggatgcccgaggcctgcgacaacacgctgctgatcgcggagcgg
tgcgacgtcgagttcaccgagtccaacggcggctacatggcccgtgccgacgtacccgca
ggcgagatcgaggagtcctggttcgtcaaggaggtctggcgcgggatcgagtcgcgctac
ccgggcgaccggctgacgcccgaggtcaagcagcgggtcgcgatggagctcgacgtcatc
gcgagcaaaggctactgcggctactacctggtggtcgccgacttcatccagtggtccaag
gacaacggcatccgggtcgggccgggccgcgggtccggcgccggatccatcgctgcgtat
gcgctccgcatcaccgacctgtgtcccctcgagcacggcctgatcttcgagcggttcctc
aatcccgagcggccctccatgcccgacttcgacatcgacttcgacgagcgtcggcgcacc
gaggtcatccagtacgtctccgacaagtacggcagtgaccgggtcgcctacatcgcgacg
ttcggccggctcaaggccaaggcggcgatcaaggacgccgcccgcgtgctcgactacggg
ttcgcggtcagcgaccggatcaccaaggcgctcccgcccgacatcatgggcaagggcgtc
ccgctcaaggagatcttcaacagcgagcaccggcgctacggcgacggcgccgagttccgc
tcgctctacgagcaggacaccgacgtgcgcacgatctaccagactgcggtcgggctggag
ggccagatccgcaactggggcgtccacgccgccggcgtcatcatgtccagcgagcccctg
gtcgacatcgtgccgatcatggcgcggccgcaggacggcgcggtcatcacccagttcgac
tacccgatgtgcgaggcgctcgggctggtcaagatggacttcctgggtctccgcaacctg
accgtcctcgacgacgcgctcgacaacatccgcgccaaccgcggtgaggaggtcgtcctc
gaggagctgacattcgacgacccggcgacctacgagctgatgtcggcgggcgacaccctc
ggtgtgttccagctcgacggcggcccgatgcgggcgctgctccgcagcatgcggcccgac
aagttcgccgacatctccgcggtcggcgcgctctaccgacccggaccgatgggcgccgac
tcccacaacaagtacgcgcgccgcaagaccggtcgcgagccgatcgacccgatccacccc
gagctggcgacggcgctggagccggtgctgggggagacctacggcctgatcgtgtaccag
gagcaggtgatggagatcgcccaggtcctggcgggcttcacgctcgggcaggccgacaac
ctgcgccgggcgatgggcaagaagaagaaggaggagctggacaagcagtacgccggcttc
cagagcgggatgctcgagcgcggctactcccagggcgcgatcaccgcgctgtgggagatc
ctgctcccgttctccgactacgccttcaacaaggcgcactcggcggcctacggcgtcatc
tcctactggaccgcctacctcaaggccaactacaccgccgagtacatggcggcgctcctc
acgtccgtgaaggacgacaaggacaagatggcgatctacctcggcgagtgccggcggctc
aagatccaggtcctgccgcccgacgtcaacgagtccgccaagaacttcacgccggtcggc
accgacatccgcttcggcatgaccgcgatccgcaatgtcggcgccaacgtcgtcgagcag
gtcgtcgcggcccgcgagagcaagggccgctacgagtcgttcaacgacttcctcgacaag
gtgccggcgctggtctgcaacaagcgggtcatcgagtcgctgatcaaggccggcgcgttc
gacgacctcaagcaccggcgccgggcgctggtcgcgatccatgagaccgcggtcgaccag
tacgtcgacatcaagcgcaacgaggcgatcggccaggactcgctgttcgcgggcctcgac
gacctcgacggcggtgacttcggcgtcagcgtgaccatccccgacctcgacgagtgggac
aagaccacgctgctcggccacgagcgcgacatgctcggtctctacgtgtccgaccacccg
ctgctggggctcgagcacgtgctcgccggcaccgccgactgcacgatcggtgagctgatg
accgacgaggagcggcccgaccaggcaacggtcaccgtcagcgggctggtcaccgccgtg
cagcgcaagatcaccaagaagggcgacccgtgggcgatgatcaccctcgaggacctcgag
ggtgccatcgaggtgctgctcttcccgagcgcctaccagctcgcgagcacgcacctggtg
cccgacgcgatcatcacggtgaagggccggctgtcgcgcaacaaggagcagcccgagctg
cacgcgatggaagtcacggtgcccgacctcgacaccgacaacgacggccccgtcgtgatc
agcctgccggcgacccggtgcaccgcgccggtcatcgcccagctcaaggaggtgctcggt
acccatccgggcctcaccgaggtgcggctgcggctgctcacccgcgacgccaccaagctg
atgcggctcgacgaccggctccgcgtctctccgagcccggcgctcttcgccgacctcaag
cagctgctcggacccggctgcctggcaggatag
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integrated database retrieval system
