Nocardioides bizhenqiangii: SHK19_18620
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Entry
SHK19_18620 CDS
T10239
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
nbi Nocardioides bizhenqiangii
Pathway
nbi00521
Streptomycin biosynthesis
nbi00523
Polyketide sugar unit biosynthesis
nbi00525
Acarbose and validamycin biosynthesis
nbi00541
Biosynthesis of various nucleotide sugars
nbi01100
Metabolic pathways
nbi01110
Biosynthesis of secondary metabolites
nbi01250
Biosynthesis of nucleotide sugars
Module
nbi_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
nbi00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SHK19_18620 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
SHK19_18620 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
SHK19_18620 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
SHK19_18620 (rfbB)
00525 Acarbose and validamycin biosynthesis
SHK19_18620 (rfbB)
Enzymes [BR:
nbi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
SHK19_18620 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
3Beta_HSD
RmlD_sub_bind
NAD_binding_4
Polysacc_synt_2
NAD_binding_10
Sacchrp_dh_NADP
adh_short
NmrA
KR
Beta_helix_2
Motif
Other DBs
NCBI-ProteinID:
WQQ25969
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Position
complement(3830366..3831364)
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AA seq
332 aa
AA seq
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MQKILVAGGAGFIGSNFVRHVVSNTDARVTVLDKMTYASSRDALVGLPEARLQVVVGDIA
DPAVVARLVGAHDVVVNFAAESHNDNALEDPSPFVQTNVVGTYVLLEAVRREGVRFHHVS
TDEVYGDLRLDAVERFTEQSPYRPSSPYAASKAAADHLVRAWVRSFGVEATISNCSNNYG
PWQHVEKFIPRQITNVINGGRPKVYGSGENVRDWIHTEDHNSAVLAVLERGRIGETYLVG
ADGQQTNLDVVRMILRLMGRPEDDYDLVADRAGHDLRYAIDARKLRAELGWKPVHSNFEE
GLARTIAWYERHVDWWRPHKDAVEASYAAKRM
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaaagatcctggtagccgggggcgctggcttcatcggctccaacttcgtccgtcac
gtcgtctccaacaccgacgcgcgagtgaccgtgctcgacaagatgacgtacgcatcgagc
cgcgacgcgctcgtcgggctgcctgaggctcggctgcaggtcgtggtcggcgacatcgcc
gaccccgcggtggtcgcccggctcgtaggagcccacgatgtggtggtcaacttcgcagcc
gagtctcacaacgacaacgcgctcgaggatccgtcgccattcgttcaaaccaacgtcgta
ggcacgtacgtgttgttggaagcagtccgccgagagggcgtccgcttccaccacgtctcg
accgacgaggtctatggcgatctcaggctcgacgccgtagagcggttcaccgagcagtcg
ccataccgacccagcagtccgtacgccgcctcgaaggcagccgccgaccacctcgtccgt
gcctgggtccgcagcttcggtgtcgaggcgaccatctcgaactgctccaacaactacggg
ccgtggcagcacgtcgagaagttcattccgcgccagatcaccaacgtgatcaatggcgga
cggcccaaggtctacggcagcggggagaacgtccgcgactggatccacaccgaggatcac
aactctgcggtcctggcggtgctcgagcgcggccgcatcggcgagacctacctggtagga
gccgacgggcagcagaccaacctcgatgtggtgaggatgatcctccgcctgatgggcagg
cccgaggacgactacgacctcgtggcagatcgtgcgggtcacgacctgcgctacgccatc
gatgcccggaagctgcgcgcggaacttggctggaagccggtccacagcaactttgaggaa
ggtctcgctcggacgatcgcctggtacgaacgtcacgtcgattggtggcgtccgcacaaa
gatgccgtcgaggcgtcctacgcagccaagcggatgtga
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