Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11: HXK95_000220
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Entry
HXK95_000220 CDS
T09858
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nbj
Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11
Pathway
nbj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nbj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HXK95_000220 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nbj03019
]
HXK95_000220 (pnp)
03016 Transfer RNA biogenesis [BR:
nbj03016
]
HXK95_000220 (pnp)
Enzymes [BR:
nbj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HXK95_000220 (pnp)
Messenger RNA biogenesis [BR:
nbj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HXK95_000220 (pnp)
Transfer RNA biogenesis [BR:
nbj03016
]
Prokaryotic type
tRNA degradation factors
HXK95_000220 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
KH_1
RNase_PH_C
PNPase
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
QWB91635
LinkDB
All DBs
Position
complement(39904..42099)
Genome browser
AA seq
731 aa
AA seq
DB search
MVEIIFESFSKKIPATHLAEGEDMIINPTGKKLISVSTDFLGRKLTLEVGKVGFRSTSSV
IVKYGEAVVLGTVQLGSKPVALDYFPLSIDYEEKWYASGRISGSRFIKREGRPSDDAVLI
GRLIDRPIRPLFPKGYREEVQVVTTVLSADPEFRPDMIAMIAASSALHLAGVPFDGPVAG
LRIGKINGEFKAFLNPEEREKSPLDLVVAGIESGITMVEAGANEVPEEEIIAGLAWAYEN
FQPAIKLQNELRAKYIEAGYFEERAFELVLPNEEILKEVEEWTDGKFDSKIREAYPKYNQ
NIAEIREKFHAEMLEKFGEEAYEEIRKEYDEAFTLAVHKAVRKGIIEDGERPDGRELDEI
RPLSSEIDFLPRAHGSSLFTRGVTQAMNIVTLAPLSYSQLVDTMEFNEIERRYMHHYNAP
GYTVGEPRRLGSPGRREIGHGYLAQRALEAVLPSVEDFPYAIRSVTEIMSQNGSTSMAAT
CSSCMALMSAGVPLKNPVSGIAMGLMMDGETPYILSDIADAEDFAGDMDFKCTGSKNGIT
ALQMDMKVHGLPVSVLEKAILTSRKGREHILRHMLSVISEPKKDLSPYAPRIEKIKINPE
KIGAIIGKGGETINKITSETGAEVDIKEDGLITIASSNAEQIEKALNWIKSLVEEPEVGK
IYRGKVVSIKDFGAFVNILPGIDGMLHISQMSEKRTEKVTDVLSQDQEIWVKLDKIDEKG
RLNLTMKGVKQ
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggtagaaattattttcgaaagcttttcgaagaagattcctgcaactcatttggcagaa
ggagaagatatgatcataaatccaaccgggaagaaattaatttcggttagtactgatttc
ttgggtcgaaaattaacactagaagttggcaaagttggctttcgttcaacttcaagcgtt
atcgtaaaatacggcgaagctgttgttttgggaaccgttcaattaggctctaaaccagtg
gcgctagattatttcccactttcaattgattacgaagagaagtggtacgcgagcggacga
atttctggctcaagatttattaagcgcgaaggtcgcccaagcgatgacgccgttttgatt
ggtcggttaatcgatcgcccaattcggcctttgtttccaaaaggttatcgcgaagaagtt
caagttgtcacaactgttctttcagccgatccagaatttcgaccagatatgattgcgatg
attgcagcttcgagcgcgttgcatcttgctggagttccgtttgatggcccagttgctggt
cttcggattggtaaaattaacggagaatttaaagctttcttaaatcctgaagaacgcgaa
aaatctccgctcgatttggttgttgccggaatcgaaagcggcatcacaatggttgaagct
ggagcaaacgaagttcctgaagaagaaattatcgcagggctagcttgggcttacgaaaat
ttccaaccagcaattaaactccaaaatgaattacgcgcaaaatatatcgaagcaggttat
tttgaggagcgcgctttcgaattagttttgcctaatgaagaaattttaaaagaagtggaa
gagtggacagacggaaaattcgattcgaaaattcgtgaggcttatccaaagtataatcaa
aatattgccgagattcgcgagaagttccacgcagaaatgcttgaaaaattcggtgaagaa
gcgtatgaagaaattcgaaaagaatatgatgaagcattcactttggcggttcataaagca
gttcgaaaggggattattgaagacggcgagcgaccagatggtcgtgagttagatgaaatt
cgaccactttcgagtgaaatcgacttcttgccacgagcacacggttcgagcctcttcact
cgtggcgtgactcaagcaatgaatatcgtaactcttgcaccactttcatattcgcaattg
gttgacacaatggagttcaacgaaattgaacgccgatatatgcaccactacaatgcaccc
ggatatactgttggtgaacctcgacgcctaggaagccctggtcggcgtgaaattggccac
ggttatttggcgcaacgagctttggaagcagttttaccgagtgttgaagattttccttat
gcaatccgtagcgtgactgaaattatgagccaaaatggttcaacttcaatggcagcaact
tgttcaagttgtatggctttaatgagcgccggcgtacctttgaaaaatcccgtttcagga
atcgcaatgggattaatgatggatggtgaaacaccttacattctaagcgatatcgccgac
gccgaagactttgctggcgatatggacttcaaatgtacaggttcgaaaaacggaattaca
gcgctccaaatggatatgaaagttcatggtttgccagtttctgttcttgaaaaagcaatc
ttaacttcacgaaaaggtcgcgagcatattttgcgccacatgttaagtgtaatttctgag
cctaaaaaagacctttcaccatatgcaccacggattgaaaagattaaaattaaccctgaa
aaaattggtgcaatcattggtaagggtggtgaaacaatcaataagattacatctgaaact
ggtgctgaagttgatatcaaggaagacggcttgattacaatcgcaagctcgaatgctgaa
cagattgaaaaagcactgaactggattaaatcattggttgaagagcctgaagttggcaaa
atctatcgcggaaaagttgtttcaattaaagactttggtgctttcgtaaatattcttcct
ggaattgatggcatgcttcacatttcacaaatgtctgaaaagcgaaccgaaaaagttacg
gatgttttaagccaagatcaagaaatttgggtaaaactagataaaattgacgaaaaggga
aggttgaatcttacaatgaaaggtgtcaagcaataa
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