Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11: HXK95_000690
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Entry
HXK95_000690 CDS
T09858
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nbj
Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11
Pathway
nbj03410
Base excision repair
nbj03430
Mismatch repair
nbj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nbj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HXK95_000690 (recJ)
03430 Mismatch repair
HXK95_000690 (recJ)
03440 Homologous recombination
HXK95_000690 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nbj03400
]
HXK95_000690 (recJ)
DNA repair and recombination proteins [BR:
nbj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HXK95_000690 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HXK95_000690 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HXK95_000690 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QWB91716
UniProt:
A0A9E6MTA7
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All DBs
Position
125964..127598
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AA seq
544 aa
AA seq
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MTVEQIFEQILKNRGISKENREAFLNPNYDNQHDPFLLPDMEKAVERLLIAHKKQEKITV
YGDYDVDGVSASTVILAAFEKFGFKNVDYFLPDRFKDGYGMNERGVRVLADRGTNLILTV
DCGSLNHAEIDFAKGFGIDTIVTDHHNIAEVQPNAVAVVNPRRKENKYPQAENFAGVGVA
FKLVQALQTKLEGFPAGQEKWLLDMVALGTVCDIMKQTVENRQNTFWGLKVLSKTRRAGL
KSMLALAGVKEPKSSTLGFIIGPRINSAGRLETAEKALDLMLEKDSFVAFEKAKNLDDLN
KKRRKIQHEALEIAIQKAEDFKNNKVLVVADESFNDGIIGIVASGLLERFKKPVFVISIE
GDVAKGSARSFGDFSASQAVQNASEIIIKGGGHDAAAGVTLPTLKIDDFRKSVNDFYDSL
KLKNQLEKLLPKVDVQLEDFSPISLELFEKISLLEPFGNGNEEPTFEIKNACVIARQEMG
DKNQHLKITLSDGEREIKMLKFNAPKDFFAEIDEKVDVIFSLGLNEWQGQKNVEGQILHL
KRRK
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgacggttgaacaaatttttgagcaaattttaaagaatcgtggaatttcaaaagagaat
cgtgaagcttttctgaatccgaattatgataaccagcacgatccttttttgttgccggat
atggaaaaagcggttgagcgattacttattgcccacaaaaaacaagaaaaaattacagtt
tatggcgattatgatgttgatggtgtttcagcttcaacagtgattttggcagctttcgaa
aaattcggttttaaaaatgtggattattttttgcccgatcgttttaaagatggctacgga
atgaacgagcgtggcgtgagagttcttgcggatcgaggaacgaacttaattttaacggtt
gactgtggaagtttaaatcacgctgaaattgattttgcaaaaggttttggaatcgataca
atcgtaacggatcaccataacattgccgaagttcaaccaaatgcagttgcggttgtaaat
ccgcgcagaaaagaaaacaaatatccgcaggctgaaaattttgccggcgttggagtggcg
tttaaattggttcaagcgcttcaaaccaaactcgagggctttcctgctggccaagaaaag
tggctacttgacatggtggcgctcggcaccgtttgcgatattatgaaacaaacggtcgag
aatcgccaaaacactttttgggggctaaaagttctttcgaaaacacgccgagctggtttg
aaatcgatgcttgcactagctggcgtgaaagagccgaaaagttcaacgcttggctttatc
atcggcccacgaatcaattcggctggtcggcttgaaactgccgaaaaggcattagattta
atgctcgaaaaagactcttttgttgctttcgaaaaagccaaaaatctcgatgatttaaat
aaaaaacgccgtaaaattcaacacgaagcgctcgaaattgcaattcaaaaagccgaagat
tttaaaaataataaggttttggttgtagctgatgaaagttttaacgatggaattattgga
attgtggcgagcggattgcttgaacgttttaaaaaaccagtttttgtgatttcgattgag
ggcgatgtagcaaagggttcggcgcgtagttttggtgatttttcggcgagtcaagcagtg
caaaatgcaagcgaaattattattaaaggcggtggtcacgatgcggccgcgggcgtaact
ttgccaactttaaaaattgatgattttcgaaaaagcgtgaacgatttttacgattcatta
aaattaaaaaaccagctcgaaaagcttttgccaaaagtggatgttcagcttgaagatttt
tcgccaatttcattagaactttttgagaaaatttcgcttcttgagccttttggaaatggg
aatgaagagccaactttcgaaattaagaatgcttgcgtaattgcacgccaagaaatgggc
gataaaaatcagcatctgaaaataactttaagtgatggcgagcgtgaaatcaaaatgtta
aaatttaatgcaccaaaagatttttttgccgaaatagatgaaaaagttgacgtgattttt
tcgctaggtttaaatgaatggcagggtcaaaaaaatgttgaaggtcaaattttgcattta
aagaggaggaaataa
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