Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11: HXK95_001210
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Entry
HXK95_001210 CDS
T09858
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
nbj
Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11
Pathway
nbj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nbj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HXK95_001210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nbj03400
]
HXK95_001210
Enzymes [BR:
nbj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
HXK95_001210
DNA repair and recombination proteins [BR:
nbj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
HXK95_001210
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
DUF2709
Motif
Other DBs
NCBI-ProteinID:
QWB91816
LinkDB
All DBs
Position
complement(221726..222610)
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AA seq
294 aa
AA seq
DB search
MKIFSWNVNGIRAVEKKGNLAEFLSIKNPDIACFQEIKIDEMQISKENFDEKYPEYFKFY
SHAERKGYAGTAIWSKQKPQAILRNFPQQILDKFNLADSFGDSSTEGRICAARFTDFWLI
TVYTPNTKNDLGRLKLRENWDAAFLAFVKGLELGEFSCEDFSNNIDIFENDSNEIFLPKP
VIFCGDLNVAHEEIDLSNPKSNRGKHGFTDEERQGFSNFISADLVDIFRIQNPEKAEIYT
WWSHFAKSRERNVGWRIDYFVVSKELNSQNNRAEIHNEILGSDHCPISLELNNA
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttttcttggaatgttaatggaatccgtgcagtcgaaaaaaaaggtaattta
gctgaatttttaagcataaaaaatcccgatatcgcgtgttttcaagaaatcaaaattgat
gaaatgcaaatttcgaaagagaattttgatgaaaaatatccagaatattttaaattttat
tctcacgccgaaagaaaaggttacgccggaacagcaatttggtcaaagcaaaagccacaa
gcgattttgcgaaattttccacaacaaattctagataaatttaatcttgccgactctttt
ggtgattcttcaaccgaagggcggatttgtgccgccagatttacagatttttggctaatt
accgtttatacaccaaacacaaaaaatgatttgggccgattaaaattacgcgaaaattgg
gacgcggcgtttttagcttttgtaaaaggcttagagcttggtgaattttcttgcgaagac
ttttcaaataatattgatattttcgaaaacgattcaaacgaaatctttttaccaaaaccc
gtgattttttgtggcgatttaaacgttgctcacgaagaaattgacctttcgaatccaaag
tctaatcgtggcaaacacggctttacagatgaagagcgccaaggattttcgaattttatt
tcagcggatcttgttgatatttttcgaattcaaaatccagaaaaagccgagatttatact
tggtggagtcatttcgcaaaatctcgtgaacggaacgttggctggcggattgattatttt
gtagtttcgaaagagttaaactcgcaaaacaatcgtgccgaaattcataatgaaattctt
ggtagtgatcactgtccaatctctttggagctaaataatgcttga
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