Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11: HXK95_001935
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Entry
HXK95_001935 CDS
T09858
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nbj
Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11
Pathway
nbj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nbj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HXK95_001935 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nbj03021
]
HXK95_001935 (rpoC)
03400 DNA repair and recombination proteins [BR:
nbj03400
]
HXK95_001935 (rpoC)
Enzymes [BR:
nbj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HXK95_001935 (rpoC)
Transcription machinery [BR:
nbj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HXK95_001935 (rpoC)
DNA repair and recombination proteins [BR:
nbj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HXK95_001935 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QWB91324
UniProt:
A0A9E6MT55
LinkDB
All DBs
Position
complement(392690..396394)
Genome browser
AA seq
1234 aa
AA seq
DB search
MAKVVNTNQIADFDAVRLAVASPEDILGWSYGEVTKPETINYRTQKPERDGLFCEKIFGP
TKDINPYDNKLKGVRSREAAVDKNGELVTKAIVRRERMGHIALAAPVAHIWFMRGAPSAM
SLLLGMTVKNIERVVYFASYVILNVDEEKRDQMLADLDAEDKAARMAIQIRYEKEAEKDG
ADIKSLAEAQTKEIEELNSNYTLKKSQLDSFVKGSLMSETDYRNLPEEYEEIIEVGMGGE
AIKTLLDEINIDELIEKLEAEAEKAKGQREKKILKRLKTIEGMKNAGIKPGSLCLTVLPV
IPPDLRPMVQLTGGRFATSDLNDLYRRVINRNNRLKKLIELNAPMVIKRNEMRMLQEAVD
SLIDNNASRSGRSVSTAGGRRKLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTL
KAHQCGLPTQMALELFKPFVISWLIEKEYAHNIRSATRLIDAREAEVWDALDAVVEGKYI
LLNRAPSLHRLSIQAFQPKLVEGKAIQLHPLVANGFNADYDGDQMAVHLPLSDAAQAEAR
DLMSISHNLLKPADGQPVLSVDQDVVYGNYYITYDKHSEMNKKPRPFANVFEAEMAYDKG
AIALQTPIRVFVKGEIRNTTLGRVFFNELLPEDYPYDNNPQTKKQINKILADVFARYGAE
MTVKIADKIKGLSFRFVTKSGLSIGKEDYTVYESEKIPEIIANGDAKTTLIQEQYDQGLL
TDQERYNLIIENWHKVIDEVSDEISERVEHQGADSPVGLMAVSGSRGSATNIRLAAGLTG
IMVDATNREIELPIRSNYTHGMSSLEAFVATRGARQGLISTALKTADSGYLTRRLVDVAQ
DVFSVADNSSEVDPGFAIYRSESQETMIPFSDRLYGRFTAEAVPGYIEADKLITREIADA
IEKDENIKEVKIQSVLSTPDLAGIPQKSYGIDMATGLLVKPAEPVGVIAAQSVGEPGTQL
TLNTFHSSGVAGSGAISQGLPRVQELLEARSPKGQAYMTEVSGVVDIWEDGNMNIVQITP
QETEDSEAHPVKYEIPNVAALAVSKNDIVRAGDRLTIGSLNLRDLMKFKGVEETQRYIMN
EILRIYAAQGQDIASKHLEIIVRQMFSRVQIEDAGDSSFIIGDVVSKAAVVEANKLLVAQ
GKKPAEFKQQLLGITKVSIFSDSFLSAASFQNTTSVLINAATSGRVDKLHGLKENVIIGR
KIPVGTGARAHEEKFEINEDLDSENETNDSSVEE
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagtggtgaatacgaaccagattgctgattttgacgcagttcgcctcgcagtt
gctagcccagaagacattttgggctggtcttacggcgaagtaacgaagccagaaacaatt
aattatcgaactcaaaaacctgagcgcgatggtttgttttgtgaaaaaatctttggacca
actaaagatattaacccttacgacaacaaattaaaaggtgttcgttctcgtgaagctgct
gttgataagaatggtgagttagttacgaaagcgattgttcgtcgtgaacgaatgggtcac
attgcattggctgctccagttgcacatatttggtttatgcgtggtgctccaagtgcaatg
agtcttcttcttggaatgacagtcaaaaacattgagcgtgttgtttattttgctagctat
gtaattcttaacgttgacgaagaaaaacgcgatcaaatgcttgcagaccttgacgctgaa
gataaagcagcgcgaatggcgatccaaattcgttacgaaaaagaagctgaaaaagatggc
gccgacattaagtcgttagctgaagctcaaactaaggaaattgaagagttaaactcaaat
tacactttgaagaaaagtcaactcgatagttttgttaaaggctcattgatgagtgaaact
gattatcgcaaccttcccgaagaatatgaagagattatcgaagttggaatgggtggtgaa
gcaattaagactttgcttgatgaaatcaacattgatgaacttatcgaaaaacttgaagct
gaagctgaaaaggctaaaggtcaacgagagaagaaaattcttaaacgtctaaaaacaatc
gaaggtatgaaaaatgctggaattaaaccaggaagtctatgcctaactgttcttccagtg
attccaccagatttgcgacctatggttcaattgacaggtggtcgatttgcgacttcagac
ttaaacgatttgtatcgccgagtaattaaccgaaacaatcgtttgaagaaattgatcgaa
cttaatgcgccaatggtgattaagcgaaacgaaatgcgaatgctccaagaggctgtagat
tcattgattgataacaatgcttctcgaagtggtcgttctgtaagcacagctggtggacgc
cgcaagcttaaatctttgagcgatatgctaaagggtaagcaaggtcgattccgtcaaaac
ttgcttggaaaacgtgttgactactccggtcgttctgtgatcgttgttggaccaactttg
aaagctcatcaatgtggtctaccaacacaaatggcgctagaattgtttaagcctttcgtt
atctcatggttgattgaaaaagaatacgcacacaatattcgttcagcaactcgattaatt
gatgcgcgagaagctgaagtttgggatgctttggatgccgttgttgaaggaaaatacatt
cttttgaaccgtgctccatcattgcaccgactttcaattcaggccttccagccaaaactt
gttgaaggaaaagcgattcaacttcacccacttgtagctaacggatttaacgccgactac
gatggagaccagatggctgttcacttgccactttctgacgccgctcaagctgaagctcgt
gacttgatgagtatttctcacaaccttttgaaacctgcagatggtcaaccggttctttct
gtcgaccaggatgttgtttacggaaattactacattacctacgacaaacattctgaaatg
aataagaaaccacgacctttcgcaaatgttttcgaagcagaaatggcttatgataaaggc
gctattgcacttcaaacaccaattcgagtttttgtaaaaggtgaaattcgaaacacaact
cttggtcgagtgttctttaatgagcttctaccagaagattacccatacgataataatcca
caaactaaaaaacaaatcaataagattttggcagatgtttttgcgcgttatggtgctgaa
atgaccgtgaaaattgccgataaaattaaaggtttgtcattccgatttgtaacaaaatca
ggattgtcgattggtaaagaagactacacagtttacgaaagtgaaaagattccagaaatt
atcgctaacggtgatgcaaaaacaacattgattcaagaacaatacgatcaaggtttgtta
acagaccaagagcgatacaacttgattattgaaaactggcacaaagttattgatgaagtt
tctgatgagatttctgagcgagttgagcaccaaggtgctgactctccggttggattgatg
gctgtgtctggttctcgtggtagcgcaacaaatattcgtcttgctgccggtttgactgga
attatggtggacgcaacaaaccgtgaaattgagcttccaattcgctcaaactacacacac
ggaatgagctcacttgaagctttcgtggccactcgtggtgcgcgtcagggattgatctca
actgcgcttaagactgccgactctggatatctaacacgtcgtctcgttgatgttgctcaa
gatgtcttctctgtagcggataattcatctgaagttgatcctggatttgcgatttatcgt
tctgaaagtcaagaaacaatgattccgttcagcgatcgtctctatggtcgatttactgcc
gaagctgttcctggctatattgaagcagataagcttatcacacgggaaattgccgatgcg
atcgaaaaagatgaaaacattaaagaagttaaaattcaaagcgtgctttcaactccagat
cttgcgggaattccacaaaaatcttatggaattgatatggcaacaggacttcttgttaaa
cctgcagaaccagttggtgtgatcgccgctcagtctgttggtgagcctggtacacagcta
actttgaacacattccacagctctggtgttgctggatctggtgcgatttctcaaggtttg
cctcgtgttcaagagcttcttgaagctcgatctcctaaaggtcaagcttatatgacagaa
gtctcaggtgtagttgatatctgggaagatggaaacatgaacattgttcagatcacacct
caagagactgaagatagtgaagctcatcctgtaaaatatgaaatcccaaatgttgcggct
cttgctgtttcgaaaaacgatattgttcgagcgggtgatcgcctaactattggttcattg
aatcttcgagatttgatgaagttcaagggtgttgaagaaactcaacgatacattatgaac
gaaatcttgcgaatttacgcagctcaaggtcaagatattgcttcaaaacaccttgagatc
atcgttcgacaaatgtttagccgagttcaaattgaagacgctggcgattcatcatttatt
atcggtgatgtagtttcgaaagctgcggttgttgaagcaaacaaacttcttgtagctcaa
ggtaaaaagcctgctgaattcaagcaacaacttcttggaattacgaaagtttcaatcttt
agtgatagcttcctatcggctgcttcgttccaaaacacaacaagtgtattgattaacgca
gcaacttctggacgagttgataaacttcatggtttgaaagaaaacgtgattatcggacgc
aagattcctgttggaactggcgctcgagctcatgaagaaaaattcgaaatcaatgaagat
ttagattctgaaaatgaaacaaatgattcttctgtagaagagtaa
DBGET
integrated database retrieval system
