Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11: HXK95_002385
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Entry
HXK95_002385 CDS
T09858
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nbj
Candidatus Nanogingivalaceae bacterium JCVI_28_bin.11
Pathway
nbj03030
DNA replication
nbj03430
Mismatch repair
nbj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nbj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HXK95_002385 (dnaE)
03430 Mismatch repair
HXK95_002385 (dnaE)
03440 Homologous recombination
HXK95_002385 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nbj03032
]
HXK95_002385 (dnaE)
03400 DNA repair and recombination proteins [BR:
nbj03400
]
HXK95_002385 (dnaE)
Enzymes [BR:
nbj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HXK95_002385 (dnaE)
DNA replication proteins [BR:
nbj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HXK95_002385 (dnaE)
DNA repair and recombination proteins [BR:
nbj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HXK95_002385 (dnaE)
BRITE hierarchy
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QWB91411
LinkDB
All DBs
Position
complement(479643..483407)
Genome browser
AA seq
1254 aa
AA seq
DB search
METEEKIKNTKTFEDLVPSDFVHLHTHTYHSLLDGLTKIDALIDNVKANGMEAVAITDHG
TMSGSIEFFKEAKSKGVKPILGIEAYVAARTRFDRDPAHDKPRYHLILLAKNQTGWQNLC
ALTSKAWMEGQYYKPRIDHDIMEKYSEGVVCLSGCAGSEISESIRSGDFERARELAKWYQ
SVYGEDFYLELQDHGHPDCPNHWEVQREINDGLFKLHDELGIPMVVTCDSHYLTHEDQDA
HEILLCVGTGSYLNDEKRMSLKEFDLFVTNPKDIIERWGKIDPEIILNTKHIAEKVNFEF
EFGKILIPKFPLPDGEDSEKAYLDKLVFQGLGERYGGIPIDEVKKMSIPDIRKKLPENVL
DRVDMELGVIDGMGYNGYFLIVQDFINWGKSQGIVFGPGRGSAAGSIIAYALHITDLDPL
EYDLLFERFLNPDRISMPDIDVDIQDTRRNEVIQYCTDKYGIDRVANIATFGKMMAKNAV
RDVARVLEVPYSEADRFAKLVPDPTQGRHTPLRVSLENDQDLKHEYETNPTAKTVYDFAM
QLEGTIRNHGVHACGVVIAPDDLIKYLPLEMAQKGVVATQVPMGQVEDLGLLKMDFLGLK
NLSIISTAQKIIKRTYGVDIDLSKLDLNDKKAYELLARGDSTGVFQLESAGMKRYLRELK
PSKFEDIIAMVALYRPGPMSEIPKFIARKHGEEPVTYYEDHMENALKNTYGILVYQEQFM
QISKEVSGFTGGQADTLRKAVGKKKIDLMKKMKGEFIEGAVKHSNADRAKVEAFWDHLEE
FANYCFNKSHAACYALIAYWTAYIKAHYPDAFMAALMTADSDDTDRLAIEIAECRSMGIQ
VLGPDVNESFKDFAIVPHEKKIRFGLLAVKAVGSGAVDAVLEARKTGGKFSSILDFAKRV
NARQFNKKAWDSLIMTGAFDEFGTRSDLLFNLERIQEYGSKSQKEALSGQTDLFGFAGAD
DMRVESTVELLTAPKQHTDKERLTWERELLGLYVSAHPLDRYVKYFEEQTQPLSQVQPNT
DGQKATIGGIVIDVRTIITKSGTKMAFVKMEDKTGEGEVIIFPNLYAEIGDRLNIDAVLK
IEGKVSARDRDGNLKPDAQIIAETVSVITDEELENYESTGHRAEGLKTRKVPQTKTVSQR
VSNGKKHTFTQKNSGTTLKTQDTNKTLDKSRSAENYQAEKIQRVFLHIKNPSDHKSLLSI
RKICEKFPGMSEVILVLGEVEKSAIRMRFKVDASSKLLKELVLLLGEECVVLKD
NT seq
3765 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggaggaaaaaataaaaaatactaaaacttttgaggatcttgttcctagcgac
tttgttcatttgcatacgcatacgtatcactctttacttgacgggttgactaaaattgac
gctttgattgacaatgttaaagctaatggaatggaagcggttgctatcactgaccatggt
actatgtctggttcaattgagttttttaaagaggctaagtctaaaggtgttaagcctatc
cttggtattgaggcttatgttgcggcaaggactcgttttgatcgagatcctgcgcacgat
aaaccgcgatatcacttgattctgttagctaaaaaccaaactggatggcaaaatctttgt
gctttaacctcaaaagcatggatggagggtcaatattataaaccgcgtatagatcatgat
atcatggaaaaatattccgagggggtagtttgtttaagcgggtgtgccggatctgaaatc
tcagaatcgattcgttctggggattttgagcgtgcaagggaacttgcaaagtggtatcag
tctgtttatggtgaagatttttatctagaactccaagaccatggccatccagattgtcct
aatcactgggaagttcagagagagatcaatgacggtctctttaaacttcatgatgagctg
ggtattccaatggttgtaacgtgcgattcacactacttaacccacgaagatcaagatgca
cacgaaatcctactttgtgttggtacgggctcatacttgaacgacgagaagcgtatgagt
ttgaaagagttcgatctttttgttacgaatcctaaagatattatcgagcgctggggaaaa
attgatccggaaattattttaaatacaaaacatattgcggaaaaagtaaatttcgaattt
gagttcgggaagatcttaatcccaaaattcccgctacccgatggtgaagatagtgaaaaa
gcttatttggataagcttgtttttcaggggcttggagagaggtatggtggaatccctatt
gatgaagttaaaaaaatgtcaattccagacattcgtaaaaaattaccagaaaatgtttta
gatcgggttgatatggagcttggggtgatcgatggaatgggttataacggttactttttg
atcgttcaagattttattaactggggaaaatcacagggtattgtttttggtccagggcgt
ggttctgctgcaggatctattattgcttatgccttacatattaccgatcttgatccgctt
gaatatgatttgctttttgaaaggtttttgaatcctgatcgaatttctatgcctgatatt
gatgtcgatattcaagatacgcggcgaaatgaagttattcaatattgtacggataaatac
ggtattgaccgtgtggcgaacattgcaacttttggtaagatgatggctaaaaacgccgtt
cgtgatgtggcacgagttttggaggtcccatattctgaggcggatcggtttgcgaaatta
gttccagacccaacacagggtagacatacaccgcttcgggtttctttagagaacgatcag
gatttaaagcatgaatatgagacaaatccgaccgcaaagactgtttatgactttgcgatg
cagctcgagggtactattcgaaaccatggcgtccatgcttgtggagttgtgatcgcgcca
gatgatctaataaaatacctaccgcttgaaatggcgcaaaaaggtgttgtagcaactcaa
gttccgatggggcaagttgaagatttgggtttgttgaagatggactttctgggtcttaaa
aacctttcaattatttctacagcccaaaaaatcataaaacgaacgtatggtgtggatatt
gacctttcgaaattagatcttaacgacaagaaggcttatgagctgctagcacgtggtgat
tctacaggagtttttcagcttgaatctgcgggaatgaaacgttatcttcgagagctcaaa
ccttcgaaatttgaagatattattgcgatggtggctctatatcgcccgggtccaatgagc
gaaattccgaagtttattgcacgaaaacatggtgaagagcctgtaacatattatgaagat
catatggagaacgctttaaaaaacacatatggaattcttgtttaccaggagcaattcatg
cagatttcaaaggaagttagtggatttactggtggtcaggctgatactcttcgtaaggct
gtgggtaagaaaaaaatcgacctaatgaaaaaaatgaagggtgagtttattgagggcgca
gtcaaacactctaacgctgatcgcgcaaaagttgaagctttctgggatcaccttgaagag
tttgcgaactattgttttaataaatcgcacgccgcttgttacgctttgattgcgtattgg
acggcgtatattaaagctcactacccagatgcttttatggcagccttaatgacggcagat
tctgatgatactgatcgactagctattgagatcgccgaatgtcgctcaatgggaattcag
gttcttggacctgacgtgaacgaatcatttaaagacttcgctatcgtgcctcatgaaaag
aagattcgttttggtcttttggctgttaaagctgttggttcgggtgctgtcgacgctgtt
ttggaggccagaaaaacgggcggaaaatttagttcaattttagattttgcaaaacgcgtg
aatgcgcgtcaattcaataaaaaggcttgggattcattaattatgacaggagcttttgat
gaattcggtacgcgatctgatctgctgtttaatttggagcggattcaagaatatggttca
aaaagccaaaaagaggctctttctggacaaacagatttatttggttttgcgggtgcagat
gatatgcgggttgaatctaccgttgaacttttaactgcaccaaaacagcatacagataaa
gagcgtttaacttgggagcgtgaattattgggactatatgtgtctgcgcacccattagat
cgttatgttaaatatttcgaagaacaaacacaacccctttcgcaggttcagccaaatacg
gatgggcaaaaagcaacaattggcgggatagtgattgatgttcgaacgattattacaaaa
agcggaacaaaaatggccttcgttaaaatggaagataaaactggcgaaggtgaggtgata
attttcccaaatctatatgcagagattggcgataggttaaatattgatgccgtattaaaa
attgaaggcaaagtgtcagcaagagatcgtgatggtaatttaaaaccagatgcgcaaatt
attgctgaaacagtttcggttataacagatgaagaattggagaattatgaatcaactggc
catcgtgcagaaggcttgaagactagaaaagtaccacaaactaagactgtttctcaaaga
gtttcgaatgggaaaaaacatacattcacgcaaaaaaatagtggaacaactttaaaaaca
caagatacaaataagacgctagacaagtctcgatcggcggaaaattatcaggcagaaaaa
atacaaagggtatttttgcacataaagaatccaagcgatcataaatctttgctttcgata
aggaaaatctgtgaaaaattccctggaatgagtgaggtaatcttggttcttggtgaagtt
gaaaaatctgcaattcgaatgcgctttaaagttgatgcgagttcgaaactacttaaagag
ttggttttgctacttggtgaagagtgtgtggtgcttaaagactaa
DBGET
integrated database retrieval system
